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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mdt:A (2.3) BS02 VOR 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828 MOAD: Kd=5nM
    2 3mdt:B (2.3) BS02 VOR 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828 MOAD: Kd=5nM
    3 4uym:A (2.55) BS02 VOR 1.14.14.154 GO:0004497 ... E9QY26 26269599
    4 4uym:B (2.55) BS02 VOR 1.14.14.154 GO:0004497 ... E9QY26 26269599
    5 4ze0:A (2.2) BS02 VOR ? GO:0004497 ... A6ZSR0 27188873 MOAD: Kd=0.03uM
    6 5hs1:A (2.1) BS02 VOR ? GO:0004497 ... A6ZSR0 27188873 MOAD: Kd=0.082uM
    7 6ay6:A (2.4) BS01 VOR ? GO:0004497 ... A0A2H4A2U9 29284029
    8 6h1o:A (1.734) BS02 VOR 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 30733479
    9 6h1o:B (1.734) BS02 VOR 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 30733479
    10 7ry8:A (1.98) BS02 VOR 1.14.14.154 GO:0004497 ... P10614 34829185
    11 7ry9:A (2.4) BS02 VOR 1.14.14.154 GO:0004497 ... P10614 34829185
    12 7ryb:A (2.9) BS02 VOR 1.14.14.154 GO:0004497 ... P10614 34829185
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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