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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1z2b:B (4.1) BS03 VLB ? GO:0000226 ... Q6B856 15917812 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    BindingDB: Ki=>100000nM
    2 1z2b:C (4.1) BS03 VLB 3.6.5.- GO:0000226 ... Q2HJ86 15917812 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    3 4eb6:B (3.47) BS02 VLB ? GO:0000226 ... D0VWY9 22868758
    4 4eb6:C (3.47) BS02 VLB ? GO:0000226 ... D0VWZ0 22868758
    5 5bmv:B (2.5) BS02 VLB ? GO:0000226 ... P02554 26660762 BindingDB: IC50=130nM
    6 5bmv:C (2.5) BS03 VLB 3.6.5.- GO:0000226 ... P81947 26660762
    7 5j2t:B (2.2) BS01 VLB ? GO:0000226 ... Q6B856 27518442 BindingDB: Ki=>100000nM
    8 5j2t:C (2.2) BS02 VLB 3.6.5.- GO:0000226 ... P81947 27518442
    9 7z7d:B (2.0) BS02 VLB ? GO:0000226 ... Q6B856 35404502
    10 7z7d:C (2.0) BS01 VLB 3.6.5.- GO:0000226 ... P81947 35404502
    11 8cle:B (3.2) BS01 VLB ? GO:0000226 ... Q6B856 38042952
    12 8cle:C (3.2) BS01 VLB 3.6.5.- GO:0000226 ... P81947 38042952
    13 8clh:B (2.5) BS05 VLB ? GO:0000226 ... Q6B856 38042952
    14 8clh:C (2.5) BS01 VLB 3.6.5.- GO:0000226 ... P81947 38042952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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