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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ig0:A (1.8) BS01 VIB 2.7.6.2 GO:0004788 ... P35202 11435118
    2 1ig0:A (1.8) BS02 VIB 2.7.6.2 GO:0004788 ... P35202 11435118
    3 1ig0:B (1.8) BS01 VIB 2.7.6.2 GO:0004788 ... P35202 11435118
    4 1ig0:B (1.8) BS02 VIB 2.7.6.2 GO:0004788 ... P35202 11435118
    5 1ig3:A (1.9) BS01 VIB 2.7.6.2 GO:0004788 ... Q9R0M5 11419946
    6 1ig3:A (1.9) BS02 VIB 2.7.6.2 GO:0004788 ... Q9R0M5 11419946
    7 1ig3:B (1.9) BS01 VIB 2.7.6.2 GO:0004788 ... Q9R0M5 11419946
    8 1ig3:B (1.9) BS02 VIB 2.7.6.2 GO:0004788 ... Q9R0M5 11419946
    9 1sbr:A (2.3) BS02 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    10 1sbr:A (2.3) BS03 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    11 1sbr:B (2.3) BS01 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    12 1sbr:B (2.3) BS02 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    13 2hh9:A (2.1) BS03 VIB N/A GO:0004788 ... N/A 18652651
    14 2hh9:A (2.1) BS04 VIB N/A GO:0004788 ... N/A 18652651
    15 2hh9:B (2.1) BS01 VIB N/A GO:0004788 ... N/A 18652651
    16 2hh9:B (2.1) BS04 VIB N/A GO:0004788 ... N/A 18652651
    17 2lh8:A (-1.00) BS01 VIB ? GO:0016020 ... P04273 21848803 PDBbind: -logKd/Ki=4.18, Kd=65.36uM
    18 3lm8:A (2.6) BS01 VIB 2.7.6.2 GO:0004788 ... O34664 N/A
    19 3lm8:B (2.6) BS01 VIB 2.7.6.2 GO:0004788 ... O34664 N/A
    20 3lm8:C (2.6) BS01 VIB 2.7.6.2 GO:0004788 ... O34664 N/A
    21 3lm8:D (2.6) BS01 VIB 2.7.6.2 GO:0004788 ... O34664 N/A
    22 3myu:A (1.95) BS01 VIB ? GO:0005886 ... Q49410 21117240
    23 3myu:B (1.95) BS01 VIB ? GO:0005886 ... Q49410 21117240
    24 3rlb:A (2.0) BS01 VIB N/A GO:0005886 ... N/A 21706007 MOAD: Kd=120pM
    PDBbind: -logKd/Ki=9.92, Kd=120pM
    25 3rlb:B (2.0) BS01 VIB N/A GO:0005886 ... N/A 21706007 MOAD: Kd=120pM
    26 4kys:A (2.18) BS01 VIB N/A N/A N/A 24079939
    27 4kys:B (2.18) BS01 VIB N/A N/A N/A 24079939
    28 4nmy:A (1.896) BS01 VIB ? GO:0009228 ... Q187U0 N/A
    29 4nmy:B (1.896) BS01 VIB ? GO:0009228 ... Q187U0 N/A
    30 5edl:A (1.95) BS01 VIB ? GO:0005886 ... O34738 27447050 MOAD: Kd=4.5nM
    PDBbind: -logKd/Ki=8.35, Kd=4.5nM
    31 8h3k:A (1.8) BS02 VIB 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37696289
    32 8sc6:A (3.13) BS01 VIB ? GO:0005277 ... O15245 37821493
    33 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2
    38503960

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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