Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i5l:A (2.75) BS01 URI ? GO:0003723 ... O29386 11331594
    2 1i5l:B (2.75) BS01 URI ? GO:0003723 ... O29386 11331594
    3 1i5l:B (2.75) BS02 URI ? GO:0003723 ... O29386 11331594
    4 1i5l:C (2.75) BS01 URI ? GO:0003723 ... O29386 11331594
    5 1i5l:G (2.75) BS02 URI ? GO:0003723 ... O29386 11331594
    6 1i5l:H (2.75) BS01 URI ? GO:0003723 ... O29386 11331594
    7 1lnx:A (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    8 1lnx:B (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    9 1lnx:C (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    10 1lnx:D (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    11 1lnx:E (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    12 1lnx:E (2.05) BS02 URI ? GO:0000398 ... Q8ZYG5 12649441
    13 1lnx:F (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    14 1lnx:G (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    15 1loj:B (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    16 1loj:C (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    17 1loj:E (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    18 1loj:F (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    19 1loj:G (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    20 1loj:J (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    21 1loj:L (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    22 1loj:M (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    23 1tlz:A (3.1) BS01 URI ? GO:0005337 ... P0A927 15272310
    24 1tlz:B (3.1) BS01 URI ? GO:0005337 ... P0A927 15272310
    25 2fr6:B (2.07) BS02 URI 3.5.4.5 GO:0001882 ... P56389 16784234
    26 2fr6:D (2.07) BS01 URI 3.5.4.5 GO:0001882 ... P56389 16784234
    27 2hwu:A (2.91) BS01 URI 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    28 2hwu:B (2.91) BS01 URI 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    29 2hwu:C (2.91) BS01 URI 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    30 2hwu:D (2.91) BS01 URI 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    31 2hwu:E (2.91) BS01 URI 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    32 2hwu:F (2.91) BS01 URI 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    33 2v0l:A (2.2) BS01 URI 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P43889 18029420
    34 3ivd:A (1.9) BS03 URI ? GO:0000166 ... A0A0H2VD83 N/A
    35 3ivd:B (1.9) BS03 URI ? GO:0000166 ... A0A0H2VD83 N/A
    36 3tij:A (2.436) BS01 URI ? GO:0005337 ... Q9KPL5 22407322
    37 4eg2:A (2.2) BS02 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    38 4eg2:B (2.2) BS01 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    39 4eg2:B (2.2) BS03 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    40 4eg2:C (2.2) BS02 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    41 4eg2:C (2.2) BS03 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    42 4eg2:D (2.2) BS01 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    43 4eg2:D (2.2) BS03 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    44 4eg2:E (2.2) BS02 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    45 4eg2:F (2.2) BS01 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    46 4eg2:F (2.2) BS03 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    47 4eg2:G (2.2) BS02 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    48 4eg2:H (2.2) BS02 URI 3.5.4.5 GO:0003824 ... Q9KSM5 N/A
    49 4jx9:A (1.4) BS01 URI 3.1.1.29 GO:0004045 ... D0C9L6 23844024 MOAD: Kd=1.4nM
    PDBbind: -logKd/Ki=8.62, Kd=2.4nM
    50 4pd6:A (2.08) BS01 URI ? GO:0005337 ... Q9KPL5 25082345 MOAD: Kd=36uM
    PDBbind: -logKd/Ki=4.44, Kd=36uM
    51 4r07:A (2.0) BS02 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    52 4r07:A (2.0) BS04 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    53 4r07:B (2.0) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    54 4r07:B (2.0) BS02 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    55 4r07:C (2.0) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    56 4r07:C (2.0) BS03 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    57 4r07:D (2.0) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    58 4r07:D (2.0) BS02 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    59 4r08:A (2.4) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    60 4r08:A (2.4) BS03 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    61 4r08:B (2.4) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    62 4r08:B (2.4) BS02 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    63 4r08:C (2.4) BS02 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    64 4r08:C (2.4) BS03 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    65 4r08:D (2.4) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    66 4r08:D (2.4) BS02 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    67 4r09:A (2.62) BS01 URI ? GO:0002224 ... Q9NR97 25599397
    68 4r09:A (2.62) BS04 URI ? GO:0002224 ... Q9NR97 25599397
    69 4r09:B (2.62) BS01 URI ? GO:0002224 ... Q9NR97 25599397
    70 4r09:B (2.62) BS02 URI ? GO:0002224 ... Q9NR97 25599397
    71 4r09:C (2.62) BS03 URI ? GO:0002224 ... Q9NR97 25599397
    72 4r09:C (2.62) BS04 URI ? GO:0002224 ... Q9NR97 25599397
    73 4r09:D (2.62) BS01 URI ? GO:0002224 ... Q9NR97 25599397
    74 4r09:D (2.62) BS02 URI ? GO:0002224 ... Q9NR97 25599397
    75 4r0a:A (1.9) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    PDBbind: -logKd/Ki=4.26, Kd=55uM
    76 4r2w:F (1.6) BS01 URI 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    77 4yyy:B (2.43) BS01 URI 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    78 4yyy:B (2.43) BS02 URI 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    79 5c80:A (2.243) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    80 5c80:B (2.243) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    81 5c80:C (2.243) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    82 5c80:D (2.243) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    83 5c80:E (2.243) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    84 5c80:F (2.243) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    85 5ilw:A (1.98) BS01 URI 3.2.2.22 GO:0000166 ... D9J2T9 30007053
    86 5l26:A (3.4) BS04 URI ? GO:0005337 ... G4CRQ5 28424521 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    87 5l26:B (3.4) BS03 URI ? GO:0005337 ... G4CRQ5 28424521
    88 5l26:C (3.4) BS01 URI ? GO:0005337 ... G4CRQ5 28424521
    89 5lhv:A (1.288) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    90 5lhv:B (1.288) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    91 5lhv:C (1.288) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    92 5lhv:D (1.288) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    93 5lhv:E (1.288) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    94 5lhv:F (1.288) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    95 5m2t:A (1.03) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    96 5m2t:B (1.03) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    97 5m2t:C (1.03) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    98 5m2t:D (1.03) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    99 5m2t:E (1.03) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    100 5m2t:F (1.03) BS01 URI 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    101 5oo4:A (1.6) BS01 URI ? GO:0016853 ... E2EKP5 28786545
    102 5oo8:A (1.78) BS01 URI ? GO:0016853 ... E2EKP5 28786545
    103 5oo9:A (1.59) BS01 URI ? GO:0016853 ... E2EKP5 28786545
    104 5ooa:A (1.6) BS01 URI ? GO:0016853 ... E2EKP5 28786545
    105 6knl:A (2.32) BS01 URI 2.7.7.9 GO:0003983 ... X2KZJ9 N/A
    106 6knl:B (2.32) BS01 URI 2.7.7.9 GO:0003983 ... X2KZJ9 N/A
    107 6tfl:A (2.397) BS02 URI ? GO:0003723 ... B0R5R2 34284708
    108 6tfl:B (2.397) BS02 URI ? GO:0003723 ... B0R5R2 34284708
    109 6tfl:C (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    110 6tfl:D (2.397) BS03 URI ? GO:0003723 ... B0R5R2 34284708
    111 6tfl:E (2.397) BS02 URI ? GO:0003723 ... B0R5R2 34284708
    112 6tfl:F (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    113 6tfl:G (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    114 6tfl:H (2.397) BS02 URI ? GO:0003723 ... B0R5R2 34284708
    115 6tfl:I (2.397) BS02 URI ? GO:0003723 ... B0R5R2 34284708
    116 6tfl:J (2.397) BS02 URI ? GO:0003723 ... B0R5R2 34284708
    117 6tfl:K (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    118 6tfl:L (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    119 6tfl:M (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    120 6tfl:N (2.397) BS01 URI ? GO:0003723 ... B0R5R2 34284708
    121 6yab:AAA (2.3) BS01 URI ? GO:0005886 ... A0A0H2UPF3 33242497
    122 6yab:BBB (2.3) BS01 URI ? GO:0005886 ... A0A0H2UPF3 33242497
    123 6yab:CCC (2.3) BS01 URI ? GO:0005886 ... A0A0H2UPF3 33242497
    124 6yab:DDD (2.3) BS01 URI ? GO:0005886 ... A0A0H2UPF3 33242497
    125 7m7k:B (1.89) BS01 URI N/A GO:0004645 ... N/A N/A
    126 7qta:A (1.06) BS04 URI 3.1.30.1 GO:0003676 ... P24021 36189740
    127 7qta:B (1.06) BS04 URI 3.1.30.1 GO:0003676 ... P24021 36189740
    128 7vte:A (2.15297) BS01 URI 2.7.1.83 GO:0005524 ... P30235 35346685
    129 7vte:B (2.15297) BS01 URI 2.7.1.83 GO:0005524 ... P30235 35346685
    130 7vte:C (2.15297) BS01 URI 2.7.1.83 GO:0005524 ... P30235 35346685
    131 7vte:D (2.15297) BS01 URI 2.7.1.83 GO:0005524 ... P30235 35346685
    132 8hch:A (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    133 8hch:B (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    134 8hch:C (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    135 8hch:D (2.0) BS01 URI 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417