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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4bj9:A (2.05) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 24900770 MOAD: ic50=45nM
    PDBbind: -logKd/Ki=7.35, IC50=45nM
    2 4bj9:B (2.05) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 24900770 MOAD: ic50=45nM
    3 4tk5:A (2.02) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857 PDBbind: -logKd/Ki=7.49, IC50=32nM
    4 4tk5:B (2.02) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    5 4tk5:C (2.02) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    6 4tk5:D (2.02) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    7 5dsy:A (2.7) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 26626480
    8 5dsy:B (2.7) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 26626480
    9 5dsy:C (2.7) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 26626480
    10 5dsy:D (2.7) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 26626480
    11 6hxr:A (2.9) BS01 UHB 2.4.2.- GO:0003950 ... Q8N5Y8 N/A
    12 6hxr:B (2.9) BS01 UHB 2.4.2.- GO:0003950 ... Q8N5Y8 N/A
    13 6tx3:B (2.96) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 32028527
    14 6vkq:A (2.9) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 32241924
    15 6vkq:B (2.9) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 32241924
    16 6vkq:C (2.9) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 32241924
    17 6vkq:D (2.9) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 32241924
    18 7aab:A (2.8) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33511412
    19 7aab:B (2.8) BS01 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33511412
    20 7s6h:B (3.1) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 35793673
    21 7s6h:D (3.1) BS02 UHB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 35793673
    22 8swz:A (3.0) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    23 8swz:B (3.0) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    24 8sx2:A (2.95) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    25 8sx2:B (2.95) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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