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BioLiP
Download all results in tab-seperated text for 228 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6pfi:B (2.89) BS01 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    202 6pfi:B (2.89) BS03 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    203 6pfi:C (2.89) BS02 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    204 6pfi:C (2.89) BS05 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    205 6pfi:D (2.89) BS01 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    206 6pfi:D (2.89) BS03 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    207 6pfi:E (2.89) BS02 UFP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A0A0S4TER9 31536894
    208 6qxg:A (2.08) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 30935102 MOAD: Ki=1.1nM
    BindingDB: Ki=14nM
    209 6qxg:A (2.08) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 30935102 MOAD: Ki=1.1nM
    BindingDB: Ki=14nM
    210 6qxg:B (2.08) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 30935102 MOAD: Ki=1.1nM
    BindingDB: Ki=14nM
    211 6qxg:B (2.08) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 30935102 MOAD: Ki=1.1nM
    BindingDB: Ki=14nM
    212 6qxg:C (2.08) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 30935102 MOAD: Ki=1.1nM
    BindingDB: Ki=14nM
    213 6qxs:A (2.88) BS01 UFP 2.1.1.45 GO:0004799 ... Q834R3 30935102 PDBbind: -logKd/Ki=7.13, Ki=74nM
    214 6qxs:B (2.88) BS01 UFP 2.1.1.45 GO:0004799 ... Q834R3 30935102 PDBbind: -logKd/Ki=7.13, Ki=74nM
    215 6qxs:C (2.88) BS01 UFP 2.1.1.45 GO:0004799 ... Q834R3 30935102
    216 6qxs:D (2.88) BS01 UFP 2.1.1.45 GO:0004799 ... Q834R3 30935102
    217 6zxo:A (2.6) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    218 6zxo:A (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    219 6zxo:B (2.6) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    220 6zxo:B (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    221 6zxo:C (2.6) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    222 6zxo:C (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    223 6zxo:D (2.6) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    224 6zxo:D (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    225 6zxo:E (2.6) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    226 6zxo:E (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    227 6zxo:F (2.6) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    228 6zxo:F (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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