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BioLiP
Download all results in tab-seperated text for 1217 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 7qib:B (1.6) BS01 UDP 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    1002 7s0y:A (2.79) BS02 UDP 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 34678063
    1003 7s0z:A (2.34) BS01 UDP 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 34678063
    1004 7s0z:B (2.34) BS01 UDP 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 34678063
    1005 7scj:A (3.4) BS01 UDP 2.4.1.225 GO:0000139 ... Q16394 36593275
    1006 7scj:B (3.4) BS01 UDP 2.4.1.224 GO:0000139 ... Q93063 36593275
    1007 7sck:A (2.8) BS01 UDP 2.4.1.225 GO:0000139 ... Q16394 36593275
    1008 7sck:B (2.8) BS02 UDP 2.4.1.224 GO:0000139 ... Q93063 36593275
    1009 7sp7:A (3.1) BS02 UDP ? GO:0016020 ... M1H2Q1 35355017
    1010 7ufp:I (2.0) BS01 UDP ? GO:0000166 ... E3GZ29 36178458
    1011 7uqx:A (3.3) BS01 UDP 2.4.1.225 GO:0000139 ... Q16394 36593275
    1012 7uqx:B (3.3) BS01 UDP 2.4.1.224 GO:0000139 ... Q93063 36593275
    1013 7uqy:A (3.0) BS01 UDP 2.4.1.225 GO:0000139 ... Q16394 36593275
    1014 7vaa:A (3.10003) BS01 UDP 2.4.1.- GO:0008194 ... A0A0M4KE44 N/A
    1015 7vaa:B (3.10003) BS01 UDP 2.4.1.- GO:0008194 ... A0A0M4KE44 N/A
    1016 7vfl:A (2.45) BS02 UDP ? GO:0000166 ... A0A0H2XGN0 34726173
    1017 7vfl:C (2.45) BS02 UDP ? GO:0000166 ... A0A0H2XGN0 34726173
    1018 7vfm:A (2.28) BS02 UDP ? GO:0000166 ... A0A0H2XGN0 34726173
    1019 7vfm:C (2.28) BS01 UDP ? GO:0000166 ... A0A0H2XGN0 34726173
    1020 7vlb:A (3.0) BS01 UDP ? GO:0000166 ... A0A289QH46 N/A
    1021 7vlb:B (3.0) BS01 UDP ? GO:0000166 ... A0A289QH46 N/A
    1022 7vm0:A (1.9) BS01 UDP 2.4.1.- GO:0008194 ... O31853 36091437
    1023 7vm0:B (1.9) BS01 UDP 2.4.1.- GO:0008194 ... O31853 36091437
    1024 7vza:A (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1025 7vza:B (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1026 7vza:C (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1027 7vza:D (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1028 7vza:E (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1029 7vza:F (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1030 7vza:G (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1031 7vza:H (2.58) BS01 UDP 5.1.3.14 GO:0000166 ... A0A0K1H2R6 35203422
    1032 7w0k:A (2.04) BS01 UDP 2.4.1.- GO:0000166 ... A0A385Z7H9 N/A
    1033 7w0z:A (2.1) BS01 UDP 2.4.1.- GO:0000166 ... A0A385Z7H9 N/A
    1034 7w10:A (2.15) BS01 UDP 2.4.1.- GO:0000166 ... A0A385Z7H9 N/A
    1035 7w11:A (2.45) BS01 UDP 2.4.1.- GO:0000166 ... A0A385Z7H9 N/A
    1036 7w1b:A (2.15) BS01 UDP 2.4.1.- GO:0000166 ... A0A385Z7H9 N/A
    1037 7x05:A (3.9) BS01 UDP 2.4.1.16 GO:0004100 ... G4Z2L3 36131020
    1038 7x05:B (3.9) BS01 UDP 2.4.1.16 GO:0004100 ... G4Z2L3 36131020
    1039 7x06:A (3.1) BS01 UDP 2.4.1.16 GO:0004100 ... G4Z2L3 36131020
    1040 7x06:B (3.1) BS01 UDP 2.4.1.16 GO:0004100 ... G4Z2L3 36131020
    1041 7yeh:A (3.92) BS01 UDP 2.4.1.255 GO:0000122 ... O15294 37907462
    1042 7yeh:C (3.92) BS01 UDP 3.2.1.169 GO:0004415 ... O60502 37907462
    1043 7ym5:A (3.45) BS02 UDP 2.4.1.- GO:0005576 ... Q9L9J3 36369343
    1044 7yp6:A (2.6) BS01 UDP ? GO:0000166 ... E5L4T5 36189743
    1045 7yp6:B (2.6) BS01 UDP ? GO:0000166 ... E5L4T5 36189743
    1046 7z5y:A (1.71) BS03 UDP 2.3.2.10 GO:0008360 ... Q9EY50 36350642
    1047 7z5z:A (1.49) BS03 UDP 2.3.2.10 GO:0008360 ... Q9EY50 36350642
    1048 7z6a:A (1.66) BS03 UDP 2.3.2.10 GO:0008360 ... Q9EY50 36350642
    1049 7z6k:A (1.6) BS03 UDP 2.3.2.10 GO:0008360 ... Q9EY50 36350642
    1050 7zay:A (2.8) BS01 UDP 2.4.1.225 GO:0000139 ... Q16394 36402845
    1051 7zer:A (1.42) BS01 UDP 2.4.1.85 GO:0005737 ... Q9SBL1 35819080
    1052 7zf0:A (1.5) BS01 UDP 2.4.1.85 GO:0005737 ... Q9SBL1 35819080
    1053 7zi1:A (1.85) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1054 7zi2:A (2.18) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1055 7zi3:A (1.9) BS02 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1056 7zi5:A (2.0) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1057 7zi6:A (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1058 7zi7:A (1.8) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1059 7zi8:A (1.99) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1060 7zi9:A (1.8) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1061 7zia:A (1.7) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1062 7zib:A (1.95) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 37248212
    1063 7zle:A (1.823) BS01 UDP ? GO:0003980 ... G0SB58 N/A
    1064 8b5s:A (1.95) BS01 UDP ? GO:0000166 ... Q9HUF6 37716703
    1065 8b63:B (2.2) BS01 UDP ? GO:0000166 ... Q9HUF6 37716703
    1066 8b6d:A (2.1) BS01 UDP 2.7.7.9 GO:0000166 ... A0A2W4LV58 N/A
    1067 8b6d:B (2.1) BS01 UDP 2.7.7.9 GO:0000166 ... A0A2W4LV58 N/A
    1068 8b6f:A0 (2.8) BS01 UDP 2.4.1.182 GO:0005543 ... Q22E24 36949187
    1069 8bqs:A0 (2.9) BS01 UDP 2.4.1.182 GO:0005543 ... Q22E24 N/A
    1070 8cgq:A (2.04) BS01 UDP 2.4.1.- GO:0008194 ... A0A096SRM5 N/A
    1071 8chd:A (2.34) BS01 UDP 2.4.1.- GO:0000166 ... A0A1S4A9U5 N/A
    1072 8chd:B (2.34) BS01 UDP 2.4.1.- GO:0000166 ... A0A1S4A9U5 N/A
    1073 8cm9:A (2.8) BS02 UDP 2.4.1.255 N/A O15294 37819980
    1074 8cm9:B (2.8) BS02 UDP 2.4.1.255 N/A O15294 37819980
    1075 8cm9:C (2.8) BS02 UDP 2.4.1.255 N/A O15294 37819980
    1076 8cm9:D (2.8) BS02 UDP 2.4.1.255 N/A O15294 37819980
    1077 8fhw:A (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    1078 8fhw:B (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    1079 8fhw:C (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    1080 8fhw:D (3.2) BS01 UDP ? GO:0003824 ... J9VJZ1 36993618
    1081 8g27:C (3.3) BS03 UDP 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    1082 8g27:D (3.3) BS03 UDP 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    1083 8g27:I (3.3) BS05 UDP 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    1084 8gkn:A (2.7) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1085 8gkn:B (2.7) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1086 8h5d:A (2.5) BS01 UDP 2.4.1.- GO:0008194 ... O31853 N/A
    1087 8h5d:B (2.5) BS01 UDP 2.4.1.- GO:0008194 ... O31853 N/A
    1088 8hjf:A (2.0) BS02 UDP N/A N/A N/A 39080270
    1089 8hjf:B (2.0) BS02 UDP N/A N/A N/A 39080270
    1090 8hjg:A (1.7) BS03 UDP N/A N/A N/A 39080270
    1091 8hjg:B (1.7) BS02 UDP N/A N/A N/A 39080270
    1092 8hjh:A (1.76) BS03 UDP N/A N/A N/A 39080270
    1093 8hjh:B (1.76) BS03 UDP N/A N/A N/A 39080270
    1094 8hjk:A (1.833) BS03 UDP N/A N/A N/A 39080270
    1095 8hjl:A (1.72) BS01 UDP N/A N/A N/A 39080270
    1096 8hjl:B (1.72) BS01 UDP N/A N/A N/A 39080270
    1097 8hjo:A (1.64) BS01 UDP N/A N/A N/A 39080270
    1098 8hjo:B (1.64) BS01 UDP N/A N/A N/A 39080270
    1099 8hjp:A (2.2) BS02 UDP N/A N/A N/A 39080270
    1100 8hjp:B (2.2) BS01 UDP N/A N/A N/A 39080270
    1101 8hoj:A (2.9) BS01 UDP N/A GO:0008194 ... N/A 39220864
    1102 8hoj:B (2.9) BS01 UDP N/A GO:0008194 ... N/A 39220864
    1103 8i0e:A (1.9) BS01 UDP 2.4.1.- GO:0008194 ... A0A482AQV3 37863881
    1104 8ina:A (1.86) BS01 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    1105 8ind:A (1.85) BS02 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    1106 8inh:A (2.5) BS01 UDP 2.4.1.- GO:0000166 ... A0A978UT44 37123177
    1107 8inh:B (2.5) BS01 UDP 2.4.1.- GO:0000166 ... A0A978UT44 37123177
    1108 8inj:A (1.76) BS01 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    1109 8ino:A (2.3) BS02 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    1110 8inp:A (2.12) BS01 UDP N/A GO:0008194 ... N/A 37581303
    1111 8inv:A (1.85) BS01 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    1112 8ita:A (2.5) BS02 UDP N/A GO:0008194 ... N/A 37581303
    1113 8j2u:A (3.32) BS01 UDP 2.4.1.- GO:0000166 ... A0A8K1ZRH3 N/A
    1114 8j2u:B (3.32) BS01 UDP 2.4.1.- GO:0000166 ... A0A8K1ZRH3 N/A
    1115 8j30:B (2.89) BS01 UDP 2.4.1.- GO:0005737 ... A3N2T3 37654596
    1116 8j66:A (2.27) BS01 UDP N/A N/A N/A 39080270
    1117 8jk8:A (1.95) BS03 UDP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    1118 8k3t:A (3.57) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    1119 8k3t:B (3.57) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    1120 8k3u:A (3.06) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    1121 8k3u:B (3.06) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    1122 8kb7:A (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    1123 8kb7:B (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    1124 8kb7:C (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    1125 8kb7:D (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    1126 8og4:A (2.1) BS02 UDP 2.4.1.223 GO:0000287 ... O43909 37828045
    1127 8og4:B (2.1) BS03 UDP 2.4.1.223 GO:0000287 ... O43909 37828045
    1128 8ooj:A (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    1129 8ooj:B (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    1130 8ooj:C (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    1131 8ooj:D (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    1132 8ovs:AAA (1.123) BS01 UDP N/A N/A N/A 38703997
    1133 8ovs:BBB (1.123) BS01 UDP N/A N/A N/A 38703997
    1134 8p0p:B (2.73) BS01 UDP N/A N/A N/A 37723184
    1135 8p0q:A (2.8) BS02 UDP N/A N/A N/A 37723184
    1136 8p0q:B (2.8) BS02 UDP N/A N/A N/A 37723184
    1137 8p20:AAA (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    1138 8p20:BBB (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    1139 8p20:CCC (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    1140 8p20:DDD (2.848) BS02 UDP N/A GO:0016757 ... N/A 38000019
    1141 8qw2:A (1.87) BS01 UDP N/A N/A Q13232 N/A
    1142 8qw2:B (1.87) BS01 UDP N/A N/A Q13232 N/A
    1143 8qw2:C (1.87) BS01 UDP N/A N/A Q13232 N/A
    1144 8qw2:D (1.87) BS01 UDP N/A N/A Q13232 N/A
    1145 8qw2:E (1.87) BS01 UDP N/A N/A Q13232 N/A
    1146 8qw2:F (1.87) BS01 UDP N/A N/A Q13232 N/A
    1147 8sft:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1148 8sft:B (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    1149 8sft:C (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    1150 8sft:D (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1151 8sfu:A (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1152 8sfu:B (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1153 8sfw:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    1154 8smp:A (3.4) BS01 UDP 2.4.1.212 GO:0016020 ... P13563 N/A
    1155 8sne:A (3.0) BS02 UDP ? GO:0016020 ... M1H2Q1 N/A
    1156 8sy9:A (2.2) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    1157 8sya:B (2.3) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    1158 8sye:A (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    1159 8sye:B (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    1160 8syh:A (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    1161 8syh:B (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    1162 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    1163 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    1164 8ui1:A (2.91) BS01 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1165 8ui6:A (2.65) BS03 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1166 8uje:A (2.5) BS01 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1167 8ujf:A (2.87) BS01 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1168 8ujf:B (2.87) BS01 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1169 8ujg:A (2.27) BS03 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1170 8ujg:B (2.27) BS03 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1171 8ujh:A (2.65) BS02 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    1172 8v9q:A (2.29) BS03 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    1173 8v9q:B (2.29) BS02 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    1174 8vh7:A (1.982) BS01 UDP N/A N/A Q5SGE1 N/A
    1175 8vh7:A (1.982) BS03 UDP N/A N/A Q5SGE1 N/A
    1176 8vh7:B (1.982) BS01 UDP N/A N/A Q5SGE1 N/A
    1177 8vh7:B (1.982) BS03 UDP N/A N/A Q5SGE1 N/A
    1178 8vh8:A (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    1179 8vh8:A (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    1180 8vh8:B (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    1181 8vh8:B (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    1182 8vh8:C (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    1183 8vh8:C (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    1184 8vh8:D (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    1185 8vh8:D (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    1186 8viw:A (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    1187 8viw:A (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    1188 8viw:B (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    1189 8viw:B (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    1190 8viw:C (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    1191 8viw:C (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    1192 8viw:D (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    1193 8viw:D (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    1194 8vr2:A (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    1195 8vr2:B (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    1196 8vr2:C (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    1197 8vr2:D (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    1198 8w53:A (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    1199 8w53:B (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    1200 8w7y:A (2.4) BS01 UDP N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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