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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fq9:C (3.0) BS02 UAP 2.7.10.1 N/A P11362 11030354
    2 1fq9:D (3.0) BS01 UAP 2.7.10.1 N/A P11362 11030354
    3 1fq9:D (3.0) BS03 UAP 2.7.10.1 N/A P11362 11030354
    4 1g5n:A (1.9) BS02 UAP ? GO:0001786 ... P14668 11342135
    5 1g5n:A (1.9) BS06 UAP ? GO:0001786 ... P14668 11342135
    6 1t8u:B (1.95) BS04 UAP 2.8.2.30 GO:0008146 ... Q9Y663 15304505
    7 1u4l:A (2.0) BS02 UAP ? GO:0002407 ... P13501 15530372
    8 1u4m:A (2.0) BS02 UAP ? GO:0002407 ... P13501 15530372
    9 2fut:A (2.3) BS02 UAP 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 16565082
    10 2fut:B (2.3) BS02 UAP 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 16565082
    11 2hyu:A (1.86) BS03 UAP ? GO:0001525 ... P07355 16882661
    12 2nwg:A (2.07) BS02 UAP ? GO:0001666 ... P48061 17264079
    13 2nwg:A (2.07) BS04 UAP ? GO:0001666 ... P48061 17264079
    14 3in9:A (2.0) BS02 UAP ? GO:0016829 ... Q89YQ6 19801541
    15 3in9:A (2.0) BS04 UAP ? GO:0016829 ... Q89YQ6 19801541
    16 3ogx:A (2.8) BS01 UAP ? GO:0001818 ... Q9GK12 22509483
    17 4pxq:A (2.2) BS05 UAP 5.1.3.17 GO:0000139 ... F1QR43 25568314
    18 4pxq:B (2.2) BS05 UAP 5.1.3.17 GO:0000139 ... F1QR43 25568314
    19 4rda:A (2.497) BS04 UAP ? GO:0016020 ... P51693 25760599
    20 5g2t:A (1.9) BS01 UAP 3.1.6.- GO:0004065 ... Q8A7C8 28630303
    21 5g2t:B (1.9) BS02 UAP 3.1.6.- GO:0004065 ... Q8A7C8 28630303
    22 5g2t:C (1.9) BS02 UAP 3.1.6.- GO:0004065 ... Q8A7C8 28630303
    23 5g2t:D (1.9) BS02 UAP 3.1.6.- GO:0004065 ... Q8A7C8 28630303
    24 6lja:A (1.978) BS02 UAP ? GO:0016829 ... B3C5J6 33627653
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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