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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 239 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a34:A (1.81) BS04 U ? GO:0005198 ... P17574 9514737
    2 1af2:A (2.3) BS02 U 3.5.4.5 GO:0001884 ... P0ABF6 9125497 PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    3 1bo7:A (2.4) BS01 U 2.1.1.45 GO:0004799 ... P00469 10653645
    4 1bo8:A (2.4) BS01 U 2.1.1.45 GO:0004799 ... P00469 10653645
    5 1klz:A (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 11900543
    6 1km4:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 11900543
    7 1ksv:A (2.65) BS01 U 5.4.99.19 GO:0000455 ... P0AA43 11953756
    8 1loj:A (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    9 1loj:D (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    10 1loj:H (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    11 1loj:I (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    12 1loj:K (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    13 1loj:N (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    14 1loq:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    15 1m8v:A (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    16 1m8v:B (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    17 1m8v:C (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    18 1m8v:D (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    19 1m8v:E (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20 1m8v:F (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    21 1m8v:G (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    22 1m8v:H (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    23 1m8v:I (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    24 1m8v:J (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    25 1m8v:K (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    26 1m8v:L (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    27 1m8v:M (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    28 1m8v:M (2.6) BS03 U ? GO:0000398 ... Q9V0Y8 12409299
    29 1m8v:N (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30 1t36:A (2.1) BS08 U 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282 MOAD: Kd=9uM
    31 1t36:C (2.1) BS08 U 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282 MOAD: Kd=9uM
    32 1t36:E (2.1) BS08 U 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282 MOAD: Kd=9uM
    33 1t36:G (2.1) BS08 U 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282 MOAD: Kd=9uM
    34 1y1q:C (2.35) BS01 U 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    35 2hbm:A (2.7) BS02 U 3.1.13.- GO:0000166 ... Q12149 16882719
    36 2ylc:A (1.3) BS01 U ? GO:0003723 ... P0A1R0 21737752 PDBbind: -logKd/Ki=7.89, Kd=13nM
    37 3erc:C (3.21) BS03 U 2.7.7.19 GO:0005524 ... P23371 19446524
    38 3erc:D (3.21) BS03 U 2.7.7.19 GO:0005524 ... P23371 19446524
    39 3g1d:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 19435314 PDBbind: -logKd/Ki=3.48, Ki=330uM
    40 3g1d:A (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 19435314 PDBbind: -logKd/Ki=3.48, Ki=330uM
    41 3g1d:B (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 19435314 PDBbind: -logKd/Ki=3.48, Ki=330uM
    42 3g1d:B (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 19435314 PDBbind: -logKd/Ki=3.48, Ki=330uM
    43 3g1x:A (1.55) BS01 U 4.1.1.23 GO:0004590 ... O26232 19435314
    44 3g1x:A (1.55) BS02 U 4.1.1.23 GO:0004590 ... O26232 19435314
    45 3g1x:B (1.55) BS01 U 4.1.1.23 GO:0004590 ... O26232 19435314
    46 3g1x:B (1.55) BS02 U 4.1.1.23 GO:0004590 ... O26232 19435314
    47 3g22:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 19435314
    48 3g22:A (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 19435314
    49 3g22:B (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 19435314
    50 3g22:B (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 19435314
    51 3i0f:A (1.56) BS02 U 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 20655926
    52 4dw5:B (2.21) BS01 U 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... Q96662 22579253
    53 4dw7:A (3.08) BS01 U 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... Q96662 22579253
    54 4dw7:B (3.08) BS01 U 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... Q96662 22579253
    55 4mml:A (1.801) BS01 U ? GO:0003723 ... Q9HUM0 24954598
    56 6g63:N (3.95) BS02 U 3.1.26.12 GO:0003676 ... P21513 30270108
    57 6trq:A (2.944) BS01 U 3.6.1.59 GO:0000288 ... Q06151 32723815
    58 6trq:C (2.944) BS01 U 3.6.1.59 GO:0000288 ... Q06151 32723815
    59 6trq:D (2.944) BS01 U 3.6.1.59 GO:0000288 ... Q06151 32723815
    60 6yvk:A (1.25) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    61 6yvl:A (1.25) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    62 6yvm:A (1.25) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    63 6yvn:A (1.25) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    64 6yvo:A (1.25) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    65 6zx0:A (1.25) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    66 7am9:A (0.99) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    67 7c4b:A (2.101) BS05 U ? GO:0000166 ... Q38DE2 33332555
    68 7oqf:A (1.05) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    69 7oqf:A (1.05) BS04 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    70 7oqf:B (1.05) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    71 7oqf:B (1.05) BS04 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    72 7oqi:A (1.15) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    73 7oqi:A (1.15) BS04 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    74 7oqi:B (1.15) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    75 7oqi:B (1.15) BS04 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    76 7oqk:A (1.1) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    77 7oqk:A (1.1) BS03 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    78 7oqk:B (1.1) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    79 7oqk:B (1.1) BS03 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    80 7oqm:A (1.05) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    81 7oqm:A (1.05) BS03 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    82 7oqm:B (1.05) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    83 7oqm:B (1.05) BS03 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    84 7oqn:A (1.1) BS01 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    85 7oqn:A (1.1) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    86 7oqn:B (1.1) BS01 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    87 7oqn:B (1.1) BS02 U 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    88 7pb5:A (1.28) BS04 U 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    89 7pd3:0 (3.4) BS03 U ? GO:0003723 ... Q9BYC8 34609277
    90 7pd3:4 (3.4) BS03 U ? GO:0003735 ... Q9P0J6 34609277
    91 7pd3:E (3.4) BS02 U ? GO:0003723 ... P09001 34609277
    92 7pd3:E (3.4) BS04 U ? GO:0003723 ... P09001 34609277
    93 7pd3:E (3.4) BS06 U ? GO:0003723 ... P09001 34609277
    94 7pd3:E (3.4) BS09 U ? GO:0003723 ... P09001 34609277
    95 7pd3:E (3.4) BS11 U ? GO:0003723 ... P09001 34609277
    96 7pd3:E (3.4) BS21 U ? GO:0003723 ... P09001 34609277
    97 7pd3:E (3.4) BS22 U ? GO:0003723 ... P09001 34609277
    98 7pd3:L (3.4) BS03 U ? GO:0003723 ... Q6P1L8 34609277
    99 7pd3:r (3.4) BS03 U ? GO:0003735 ... Q9NVS2 34609277
    100 7pd3:z (3.4) BS02 U ? GO:0003924 ... Q9BT17 34609277
    101 7qoq:A (1.93) BS01 U 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    102 7qoq:B (1.93) BS01 U 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    103 7x4p:A (1.6) BS02 U 2.7.7.- GO:0000166 ... P0DX98 37604815
    104 8b5q:A (2.0) BS01 U ? GO:0000166 ... Q9HUF6 37716703
    105 8b5q:B (2.0) BS01 U ? GO:0000166 ... Q9HUF6 37716703
    106 8evr:BB (2.87) BS03 U ? GO:0003735 ... N/A 37595043
    107 8evr:BC (2.87) BS02 U ? GO:0003723 ... N/A 37595043
    108 8evr:BD (2.87) BS03 U ? GO:0003723 ... N/A 37595043
    109 8evr:BD (2.87) BS09 U ? GO:0003723 ... N/A 37595043
    110 8evr:BF (2.87) BS04 U ? GO:0000028 ... A0A1L4AA68 37595043
    111 8evr:BF (2.87) BS06 U ? GO:0000028 ... A0A1L4AA68 37595043
    112 8evr:BF (2.87) BS07 U ? GO:0000028 ... A0A1L4AA68 37595043
    113 8evr:BF (2.87) BS09 U ? GO:0000028 ... A0A1L4AA68 37595043
    114 8evr:BF (2.87) BS11 U ? GO:0000028 ... A0A1L4AA68 37595043
    115 8evr:BG (2.87) BS03 U ? GO:0000462 ... P0CX37 37595043
    116 8evr:BI (2.87) BS03 U ? GO:0000462 ... P0CX39 37595043
    117 8evr:BK (2.87) BS03 U ? GO:0000054 ... Q08745 37595043
    118 8evr:BO (2.87) BS02 U ? GO:0000028 ... P06367 37595043
    119 8evr:BO (2.87) BS05 U ? GO:0000028 ... P06367 37595043
    120 8evr:BP (2.87) BS06 U ? GO:0003723 ... N/A 37595043
    121 8evr:BP (2.87) BS07 U ? GO:0003723 ... N/A 37595043
    122 8evr:BP (2.87) BS11 U ? GO:0003723 ... N/A 37595043
    123 8evr:BP (2.87) BS12 U ? GO:0003723 ... N/A 37595043
    124 8evr:BQ (2.87) BS02 U ? GO:0000462 ... P0CX51 37595043
    125 8evr:BQ (2.87) BS03 U ? GO:0000462 ... P0CX51 37595043
    126 8evr:BQ (2.87) BS10 U ? GO:0000462 ... P0CX51 37595043
    127 8evr:BQ (2.87) BS14 U ? GO:0000462 ... P0CX51 37595043
    128 8evr:BQ (2.87) BS15 U ? GO:0000462 ... P0CX51 37595043
    129 8evr:BQ (2.87) BS16 U ? GO:0000462 ... P0CX51 37595043
    130 8evr:BQ (2.87) BS19 U ? GO:0000462 ... P0CX51 37595043
    131 8evr:BR (2.87) BS04 U ? GO:0000028 ... P02407 37595043
    132 8evr:BR (2.87) BS06 U ? GO:0000028 ... P02407 37595043
    133 8evr:BS (2.87) BS10 U ? GO:0000054 ... P0CX55 37595043
    134 8evr:BS (2.87) BS11 U ? GO:0000054 ... P0CX55 37595043
    135 8evr:BU (2.87) BS03 U ? GO:0003723 ... N/A 37595043
    136 8evr:BU (2.87) BS04 U ? GO:0003723 ... N/A 37595043
    137 8evr:BU (2.87) BS10 U ? GO:0003723 ... N/A 37595043
    138 8evr:BZ (2.87) BS04 U ? N/A N/A 37595043
    139 8evr:Ba (2.87) BS05 U ? GO:0003735 ... N/A 37595043
    140 8evr:Ba (2.87) BS08 U ? GO:0003735 ... N/A 37595043
    141 8evr:Bd (2.87) BS01 U ? GO:0003735 ... N/A 37595043
    142 8evr:Bd (2.87) BS05 U ? GO:0003735 ... N/A 37595043
    143 8evr:Bd (2.87) BS09 U ? GO:0003735 ... N/A 37595043
    144 8evr:Bf (2.87) BS01 U ? GO:0003735 ... N/A 37595043
    145 8evr:Bf (2.87) BS03 U ? GO:0003735 ... N/A 37595043
    146 8evr:Bf (2.87) BS04 U ? GO:0003735 ... N/A 37595043
    147 8evr:Bf (2.87) BS06 U ? GO:0003735 ... N/A 37595043
    148 8evs:BB (2.62) BS02 U ? GO:0003735 ... N/A 37595043
    149 8evs:BC (2.62) BS02 U ? GO:0003723 ... N/A 37595043
    150 8evs:BC (2.62) BS03 U ? GO:0003723 ... N/A 37595043
    151 8evs:BD (2.62) BS01 U ? GO:0003723 ... N/A 37595043
    152 8evs:BD (2.62) BS08 U ? GO:0003723 ... N/A 37595043
    153 8evs:BD (2.62) BS09 U ? GO:0003723 ... N/A 37595043
    154 8evs:BF (2.62) BS05 U ? GO:0000028 ... A0A1L4AA68 37595043
    155 8evs:BF (2.62) BS06 U ? GO:0000028 ... A0A1L4AA68 37595043
    156 8evs:BF (2.62) BS07 U ? GO:0000028 ... A0A1L4AA68 37595043
    157 8evs:BF (2.62) BS12 U ? GO:0000028 ... A0A1L4AA68 37595043
    158 8evs:BG (2.62) BS03 U ? GO:0000462 ... P0CX37 37595043
    159 8evs:BK (2.62) BS04 U ? GO:0000054 ... Q08745 37595043
    160 8evs:BK (2.62) BS05 U ? GO:0000054 ... Q08745 37595043
    161 8evs:BM (2.62) BS01 U ? GO:0003735 ... N/A 37595043
    162 8evs:BM (2.62) BS04 U ? GO:0003735 ... N/A 37595043
    163 8evs:BO (2.62) BS02 U ? GO:0000028 ... P06367 37595043
    164 8evs:BO (2.62) BS04 U ? GO:0000028 ... P06367 37595043
    165 8evs:BP (2.62) BS07 U ? GO:0003723 ... N/A 37595043
    166 8evs:BP (2.62) BS08 U ? GO:0003723 ... N/A 37595043
    167 8evs:BP (2.62) BS11 U ? GO:0003723 ... N/A 37595043
    168 8evs:BP (2.62) BS13 U ? GO:0003723 ... N/A 37595043
    169 8evs:BQ (2.62) BS02 U ? GO:0000462 ... P0CX51 37595043
    170 8evs:BQ (2.62) BS07 U ? GO:0000462 ... P0CX51 37595043
    171 8evs:BQ (2.62) BS09 U ? GO:0000462 ... P0CX51 37595043
    172 8evs:BQ (2.62) BS11 U ? GO:0000462 ... P0CX51 37595043
    173 8evs:BQ (2.62) BS12 U ? GO:0000462 ... P0CX51 37595043
    174 8evs:BQ (2.62) BS13 U ? GO:0000462 ... P0CX51 37595043
    175 8evs:BR (2.62) BS01 U ? GO:0000028 ... P02407 37595043
    176 8evs:BR (2.62) BS06 U ? GO:0000028 ... P02407 37595043
    177 8evs:BS (2.62) BS08 U ? GO:0000054 ... P0CX55 37595043
    178 8evs:BS (2.62) BS11 U ? GO:0000054 ... P0CX55 37595043
    179 8evs:BS (2.62) BS12 U ? GO:0000054 ... P0CX55 37595043
    180 8evs:BT (2.62) BS04 U ? GO:0000028 ... P07280 37595043
    181 8evs:BT (2.62) BS15 U ? GO:0000028 ... P07280 37595043
    182 8evs:BU (2.62) BS01 U ? GO:0003723 ... N/A 37595043
    183 8evs:BU (2.62) BS03 U ? GO:0003723 ... N/A 37595043
    184 8evs:BZ (2.62) BS03 U ? N/A N/A 37595043
    185 8evs:Ba (2.62) BS05 U ? GO:0003735 ... N/A 37595043
    186 8evs:Ba (2.62) BS08 U ? GO:0003735 ... N/A 37595043
    187 8evs:Bc (2.62) BS04 U ? GO:0003735 ... N/A 37595043
    188 8evs:Bd (2.62) BS01 U ? GO:0003735 ... N/A 37595043
    189 8evs:Bd (2.62) BS07 U ? GO:0003735 ... N/A 37595043
    190 8evs:Bd (2.62) BS08 U ? GO:0003735 ... N/A 37595043
    191 8evs:Bf (2.62) BS01 U ? GO:0003735 ... N/A 37595043
    192 8evs:Bf (2.62) BS02 U ? GO:0003735 ... N/A 37595043
    193 8evs:Bf (2.62) BS04 U ? GO:0003735 ... N/A 37595043
    194 8evs:DC (2.62) BS04 U 3.6.5.- GO:0003746 ... P32324 37595043
    195 8evt:BB (2.2) BS02 U ? GO:0003735 ... N/A 37595043
    196 8evt:BC (2.2) BS02 U ? GO:0003723 ... N/A 37595043
    197 8evt:BC (2.2) BS03 U ? GO:0003723 ... N/A 37595043
    198 8evt:BD (2.2) BS02 U ? GO:0003723 ... N/A 37595043
    199 8evt:BD (2.2) BS08 U ? GO:0003723 ... N/A 37595043
    200 8evt:BD (2.2) BS09 U ? GO:0003723 ... N/A 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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