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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1pi3:A (1.2) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    2 1po7:A (1.2) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    3 1q6z:A (1.0) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    4 1rp7:A (2.09) BS02 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    5 1rp7:A (2.09) BS03 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    6 1rp7:B (2.09) BS01 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    7 1rp7:B (2.09) BS03 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    8 1yno:A (1.22) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    9 2bfc:A (1.64) BS02 TZD 1.2.4.4 GO:0003863 ... P12694 16472748
    10 2bff:A (1.46) BS01 TZD 1.2.4.4 GO:0003863 ... P12694 16472748
    11 2c31:A (1.73) BS02 TZD 4.1.1.8 GO:0000166 ... P40149 16216870
    12 2c31:A (1.73) BS04 TZD 4.1.1.8 GO:0000166 ... P40149 16216870
    13 2c31:B (1.73) BS02 TZD 4.1.1.8 GO:0000166 ... P40149 16216870
    14 2c31:B (1.73) BS04 TZD 4.1.1.8 GO:0000166 ... P40149 16216870
    15 2fn3:A (1.0) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    16 4gg1:A (1.069) BS01 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    17 4gm0:A (1.07) BS01 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    18 4gm1:A (1.26) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    19 4gm4:A (1.28) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    20 4gp9:A (1.07) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    21 4gpe:A (1.39) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    22 4jd5:A (1.33) BS01 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    23 4ju8:A (1.251) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    24 4ju9:A (1.124) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    25 4jua:A (1.15) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    26 4jud:X (1.65) BS01 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    27 4k9l:A (1.649) BS01 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    28 4k9n:A (1.7) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    29 4k9n:A (1.7) BS04 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    30 4k9n:B (1.7) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    31 4k9n:B (1.7) BS04 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    32 4k9n:C (1.7) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    33 4k9n:C (1.7) BS04 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    34 4k9n:D (1.7) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    35 4k9n:D (1.7) BS04 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    36 4mpp:A (1.501) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    37 4mzx:A (1.558) BS02 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    38 4qel:A (1.432) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    39 5dgt:A (1.081) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    40 5k6r:A (2.734) BS04 TZD 2.2.1.6 GO:0000287 ... P17597 28137884
    41 5k6t:A (2.763) BS04 TZD 2.2.1.6 GO:0000287 ... P17597 28137884
    42 6dep:A (2.149) BS04 TZD 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    43 6der:A (2.126) BS04 TZD 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    44 6des:A (2.402) BS04 TZD 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    45 6xn8:A (1.95) BS02 TZD ? GO:0000166 ... A0A1H8YFL8 N/A
    46 6xn8:A (1.95) BS04 TZD ? GO:0000166 ... A0A1H8YFL8 N/A
    47 6xn8:B (1.95) BS01 TZD ? GO:0000166 ... A0A1H8YFL8 N/A
    48 6xn8:B (1.95) BS03 TZD ? GO:0000166 ... A0A1H8YFL8 N/A
    49 7egv:A (2.54) BS02 TZD N/A GO:0000287 ... N/A 34132537
    50 7egv:A (2.54) BS05 TZD N/A GO:0000287 ... N/A 34132537
    51 7egv:B (2.54) BS01 TZD N/A GO:0000287 ... N/A 34132537
    52 7egv:B (2.54) BS04 TZD N/A GO:0000287 ... N/A 34132537
    53 7ehe:A (2.28) BS03 TZD N/A GO:0000287 ... N/A 34132537
    54 7ehe:A (2.28) BS04 TZD N/A GO:0000287 ... N/A 34132537
    55 7ehe:B (2.28) BS01 TZD N/A GO:0000287 ... N/A 34132537
    56 7ehe:B (2.28) BS04 TZD N/A GO:0000287 ... N/A 34132537
    57 7stq:A (3.3) BS04 TZD 2.2.1.6 GO:0000287 ... P17597 35690625
    58 7u25:A (3.19) BS04 TZD 2.2.1.6 GO:0000287 ... P17597 35690625
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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