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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i6k:A (1.72) BS01 TYM 6.1.1.2 GO:0000166 ... P00953 11679724
    2 1i6l:A (1.72) BS01 TYM 6.1.1.2 GO:0000166 ... P00953 11679724
    3 1i6m:A (1.72) BS01 TYM 6.1.1.2 GO:0000166 ... P00953 11679724
    4 1r6t:A (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 14671330
    5 1r6u:A (2.0) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 17637340
    6 2quj:A (2.42) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 18180246
    7 3jxe:A (3.0) BS01 TYM 6.1.1.2 GO:0000166 ... O59584 N/A
    8 3jxe:B (3.0) BS01 TYM 6.1.1.2 GO:0000166 ... O59584 N/A
    9 3kt3:A (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    10 3kt3:B (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    11 3kt3:C (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    12 3kt3:D (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    13 4j75:A (2.4) BS01 TYM 6.1.1.2 GO:0000166 ... Q8IDW3 23665145
    14 4j75:B (2.4) BS01 TYM 6.1.1.2 GO:0000166 ... Q8IDW3 23665145
    15 5ujj:A (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 28910573
    16 5ujj:B (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 28910573
    17 7elt:A (1.9) BS01 TYM 6.1.1.2 GO:0000166 ... P9WFT3 34908399
    18 8i1w:B (1.8) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    19 8i1y:B (1.78) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    20 8i1z:B (1.8) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    21 8i27:B (1.95) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    22 8i2a:B (2.35) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    23 8i2c:B (2.07) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    24 8i2j:B (2.65) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    25 8i2l:B (1.95) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    26 8i2m:B (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    27 8i4i:B (2.2) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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