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BioLiP
Download all results in tab-seperated text for 295 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4zu7:G (2.3) BS01 TYD ? N/A Q6TFC5 26125548
    202 4zu7:G (2.3) BS02 TYD ? N/A Q6TFC5 26125548
    203 4zu7:H (2.3) BS01 TYD ? N/A Q6TFC5 26125548
    204 4zu7:H (2.3) BS02 TYD ? N/A Q6TFC5 26125548
    205 4zyj:A (2.736) BS01 TYD 1.14.13.- GO:0003995 ... A0A0R4I990 26457508
    206 4zyj:B (2.736) BS01 TYD 1.14.13.- GO:0003995 ... A0A0R4I990 26457508
    207 4zyj:C (2.736) BS01 TYD 1.14.13.- GO:0003995 ... A0A0R4I990 26457508
    208 4zyj:D (2.736) BS01 TYD 1.14.13.- GO:0003995 ... A0A0R4I990 26457508
    209 5h56:A (1.7) BS02 TYD 2.7.4.9 GO:0004798 ... O67099 28627020
    210 5h56:B (1.7) BS02 TYD 2.7.4.9 GO:0004798 ... O67099 28627020
    211 5lkm:A (3.5) BS01 TYD 3.6.4.- GO:0000725 ... Q8DRP0 28561029
    212 5lkm:B (3.5) BS01 TYD 3.6.4.- GO:0000725 ... Q8DRP0 28561029
    213 5lkm:C (3.5) BS01 TYD 3.6.4.- GO:0000725 ... Q8DRP0 28561029
    214 5tpu:A (2.0) BS01 TYD ? N/A Q9ALS4 28096310
    215 5tpu:A (2.0) BS02 TYD ? N/A Q9ALS4 28096310
    216 5tpu:B (2.0) BS01 TYD ? N/A Q9ALS4 28096310
    217 5tpu:B (2.0) BS02 TYD ? N/A Q9ALS4 28096310
    218 5tpu:C (2.0) BS01 TYD ? N/A Q9ALS4 28096310
    219 5tpu:C (2.0) BS02 TYD ? N/A Q9ALS4 28096310
    220 5tpu:D (2.0) BS01 TYD ? N/A Q9ALS4 28096310
    221 5tpu:D (2.0) BS02 TYD ? N/A Q9ALS4 28096310
    222 5tpv:A (2.14) BS01 TYD ? N/A Q9ALS3 28096310
    223 5tpv:A (2.14) BS02 TYD ? N/A Q9ALS3 28096310
    224 5tpv:B (2.14) BS01 TYD ? N/A Q9ALS3 28096310
    225 5tpv:B (2.14) BS02 TYD ? N/A Q9ALS3 28096310
    226 5tpv:C (2.14) BS01 TYD ? N/A Q9ALS3 28096310
    227 5uij:A (1.9) BS01 TYD ? GO:0003824 ... U3GK13 28263875
    228 5uij:A (1.9) BS02 TYD ? GO:0003824 ... U3GK13 28263875
    229 5uij:B (1.9) BS01 TYD ? GO:0003824 ... U3GK13 28263875
    230 5uij:B (1.9) BS02 TYD ? GO:0003824 ... U3GK13 28263875
    231 5uim:B (2.2) BS03 TYD ? GO:0003824 ... U3GK13 28263875
    232 5uin:A (2.2) BS01 TYD ? GO:0003824 ... U3GK13 28263875
    233 5uin:B (2.2) BS01 TYD ? GO:0003824 ... U3GK13 28263875
    234 5vyq:B (1.6) BS01 TYD 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    235 5wxk:A (1.801) BS01 TYD 2.4.1.- GO:0016757 ... E6MVV9 29440735
    236 5zax:A (2.36) BS05 TYD 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    237 5zb0:A (1.19) BS01 TYD 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    238 5zb0:B (1.19) BS01 TYD 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    239 6b5e:A (1.85) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    240 6b5e:B (1.85) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    241 6b5e:C (1.85) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    242 6b5e:D (1.85) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    243 6b5e:G (1.85) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    244 6b5e:H (1.85) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    245 6b5k:A (1.6) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    246 6b5k:B (1.6) BS03 TYD 2.7.7.24 GO:0000287 ... P9WH13 29076563
    247 6j7l:A (1.851) BS01 TYD 2.4.1.- GO:0016757 ... Q9HZZ1 31010899 PDBbind: -logKd/Ki=4.50, Kd=31.4uM
    248 6j7m:A (2.301) BS01 TYD 2.4.1.- GO:0016757 ... Q9HZZ1 31010899
    249 6j7m:C (2.301) BS01 TYD 2.4.1.- GO:0016757 ... Q9HZZ1 31010899
    250 6vlo:A (2.05) BS01 TYD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    251 6vlo:B (2.05) BS01 TYD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    252 6vlo:C (2.05) BS01 TYD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    253 6vlo:D (2.05) BS01 TYD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    254 6xpv:A (2.3) BS01 TYD 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    255 6xpv:B (2.3) BS01 TYD 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    256 6xpv:C (2.3) BS01 TYD 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    257 6xpv:E (2.3) BS01 TYD 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    258 6xpv:G (2.3) BS01 TYD 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    259 6xpv:H (2.3) BS01 TYD 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    260 7f2a:A (2.58) BS01 TYD ? GO:0016757 ... X5EQ00 N/A
    261 7f2a:F (2.58) BS01 TYD ? GO:0016757 ... X5EQ00 N/A
    262 7mfo:A (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    263 7mfo:A (1.7) BS04 TYD ? GO:0000271 ... Q5UPL1 34076307
    264 7mfo:B (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    265 7mfo:B (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    266 7mfo:C (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    267 7mfo:C (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    268 7mfo:D (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    269 7mfo:D (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    270 7mfo:E (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    271 7mfo:E (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    272 7mfo:F (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    273 7mfo:F (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    274 7mfo:G (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    275 7mfo:G (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    276 7mfo:H (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    277 7mfo:H (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    278 7mfo:I (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    279 7mfo:I (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    280 7mfo:J (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    281 7mfo:J (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    282 7n67:A (2.5) BS01 TYD ? N/A C5ZW00 34379357
    283 7n67:B (2.5) BS01 TYD ? N/A C5ZW00 34379357
    284 7pwb:AAA (1.87) BS01 TYD 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    285 7pwb:AAA (1.87) BS02 TYD 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    286 7pwb:AAA (1.87) BS03 TYD 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    287 7pwb:BBB (1.87) BS01 TYD 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    288 7pwb:BBB (1.87) BS02 TYD 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    289 7pwb:BBB (1.87) BS03 TYD 5.1.3.13 GO:0005829 ... Q83AP3 35398092
    290 7pwh:AAA (1.9) BS01 TYD 5.1.3.13 GO:0005829 ... P29783 35398092
    291 7s45:A (1.2) BS01 TYD N/A GO:0016740 ... N/A 34651380
    292 7txq:A (1.65) BS01 TYD ? GO:0016740 ... A0A334FGR6 35277885
    293 7yp5:A (2.33) BS01 TYD ? GO:0000166 ... E5L4T5 36189743
    294 7yp5:B (2.33) BS01 TYD ? GO:0000166 ... E5L4T5 36189743
    295 8sk0:A (1.51) BS02 TYD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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