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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2oo5:A (2.6) BS01 TXD 7.1.1.1 GO:0000166 ... Q2RSB2 17323922
    2 2oo5:B (2.6) BS01 TXD 7.1.1.1 GO:0000166 ... Q2RSB2 17323922
    3 2r14:A (1.4) BS02 TXD ? GO:0000166 ... Q51990 17939663 MOAD: Kd=0.63mM
    4 3gx9:A (2.28) BS02 TXD ? GO:0000166 ... Q51990 19405065
    5 3krz:A (1.8) BS02 TXD ? GO:0000166 ... B0KAH1 19943268
    6 3krz:B (1.8) BS02 TXD ? GO:0000166 ... B0KAH1 19943268
    7 3krz:C (1.8) BS02 TXD ? GO:0000166 ... B0KAH1 19943268
    8 3krz:D (1.8) BS02 TXD ? GO:0000166 ... B0KAH1 19943268
    9 5ixs:A (2.05) BS01 TXD 1.1.1.27 GO:0003824 ... P00338 27774125
    10 5ixs:B (2.05) BS01 TXD 1.1.1.27 GO:0003824 ... P00338 27774125
    11 5ixs:D (2.05) BS01 TXD 1.1.1.27 GO:0003824 ... P00338 27774125
    12 6vdj:A (2.0) BS01 TXD N/A GO:0003824 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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