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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ecm:A (2.2) BS01 TSA 4.2.1.51
    5.4.99.5    		 GO:0004106 ... P0A9J8 N/A MOAD: Kd=2.8uM
    2 1ecm:B (2.2) BS01 TSA 4.2.1.51
    5.4.99.5    		 GO:0004106 ... P0A9J8 N/A MOAD: Kd=2.8uM
    3 1fig:H (3.0) BS01 TSA N/A N/A N/A 8303271 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    4 2cht:A (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    5 2cht:A (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    6 2cht:B (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    7 2cht:B (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    8 2cht:C (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    9 2cht:C (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    10 2cht:D (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    11 2cht:D (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    12 2cht:E (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    13 2cht:E (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    14 2cht:F (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    15 2cht:F (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    16 2cht:G (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    17 2cht:G (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    18 2cht:H (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    19 2cht:H (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    20 2cht:I (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    21 2cht:I (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    22 2cht:J (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    23 2cht:J (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    24 2cht:K (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    25 2cht:K (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    26 2cht:L (2.2) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    27 2cht:L (2.2) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 8378335 MOAD: Ki=3uM
    28 2fp2:B (1.64) BS01 TSA 5.4.99.5 GO:0004106 ... P9WIB9 16499927
    29 2gtv:X (-1.00) BS01 TSA 5.4.99.5 GO:0046417 ... Q57696 17994104 PDBbind: -logKd/Ki=5.15, Kd=7uM
    30 2w1a:C (2.35) BS01 TSA 5.4.99.5 GO:0046417 ... P9WIC1 19556970
    31 2w1a:D (2.35) BS01 TSA 5.4.99.5 GO:0046417 ... P9WIC1 19556970
    32 3csm:A (3.0) BS02 TSA 5.4.99.5 GO:0004106 ... P32178 9384560
    33 3csm:B (3.0) BS02 TSA 5.4.99.5 GO:0004106 ... P32178 9384560
    34 3zp4:A (1.798) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    35 3zp4:B (1.798) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    36 3zp4:C (1.798) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    37 3zp4:C (1.798) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    38 3zp4:D (1.798) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    39 3zp4:D (1.798) BS02 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    40 3zp4:E (1.798) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    41 3zp4:F (1.798) BS01 TSA 5.4.99.5 GO:0004106 ... P19080 25422475
    42 4csm:A (2.8) BS01 TSA 5.4.99.5 GO:0004106 ... P32178 9384560
    43 4csm:B (2.8) BS01 TSA 5.4.99.5 GO:0004106 ... P32178 9384560
    44 5ckx:C (2.7) BS01 TSA 5.4.99.5 GO:0046417 ... P9WIC1 26776476
    45 5ckx:D (2.7) BS01 TSA 5.4.99.5 GO:0046417 ... P9WIC1 26776476
    46 5hud:E (2.15) BS01 TSA 5.4.99.5 GO:0046417 ... Q8NS29 29178787
    47 5hud:F (2.15) BS01 TSA 5.4.99.5 GO:0046417 ... Q8NS29 29178787
    48 5hud:G (2.15) BS01 TSA 5.4.99.5 GO:0046417 ... Q8NS29 29178787
    49 5hud:H (2.15) BS01 TSA 5.4.99.5 GO:0046417 ... Q8NS29 29178787
    50 8pnh:A (1.9) BS01 TSA N/A N/A A0AAJ6N664 N/A
    51 8pnj:A (2.355) BS01 TSA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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