Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1419 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 7 8 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 8rpj:F (1.9) BS02 TPP N/A N/A N/A 38874074
    1402 8wa8:A (1.48) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 N/A
    1403 9ev3:A (1.219) BS02 TPP N/A N/A Q8NMG5 39080980
    1404 9ev5:A (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    1405 9ev5:A (1.863) BS04 TPP N/A N/A Q8NMG5 39080980
    1406 9ev5:B (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    1407 9ev5:B (1.863) BS02 TPP N/A N/A Q8NMG5 39080980
    1408 9ev5:C (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    1409 9ev5:C (1.863) BS04 TPP N/A N/A Q8NMG5 39080980
    1410 9ev5:D (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    1411 9ev5:D (1.863) BS02 TPP N/A N/A Q8NMG5 39080980
    1412 9ev6:A (1.891) BS02 TPP N/A N/A Q8NMG5 39080980
    1413 9ev6:A (1.891) BS04 TPP N/A N/A Q8NMG5 39080980
    1414 9ev6:B (1.891) BS01 TPP N/A N/A Q8NMG5 39080980
    1415 9ev6:B (1.891) BS03 TPP N/A N/A Q8NMG5 39080980
    1416 9ev6:C (1.891) BS02 TPP N/A N/A Q8NMG5 39080980
    1417 9ev6:C (1.891) BS04 TPP N/A N/A Q8NMG5 39080980
    1418 9ev6:D (1.891) BS01 TPP N/A N/A Q8NMG5 39080980
    1419 9ev6:D (1.891) BS03 TPP N/A N/A Q8NMG5 39080980
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417