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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1419 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 4k9p:B (2.244) BS04 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    602 4k9p:C (2.244) BS01 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    603 4k9p:C (2.244) BS04 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    604 4k9p:D (2.244) BS01 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    605 4k9p:D (2.244) BS04 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    606 4k9q:A (1.598) BS02 TPP 4.1.1.7 GO:0000287 ... A4SXU0 N/A
    607 4k9q:B (1.598) BS02 TPP 4.1.1.7 GO:0000287 ... A4SXU0 N/A
    608 4kgd:A (1.06) BS03 TPP N/A GO:0000287 ... N/A 23748673
    609 4kgd:B (1.06) BS03 TPP N/A GO:0000287 ... N/A 23748673
    610 4kxu:A (0.98) BS03 TPP 2.2.1.1 GO:0000287 ... P29401 23965678
    611 4kxv:A (0.97) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 23965678
    612 4kxw:A (0.97) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 23965678
    613 4kxx:A (1.03) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 23965678
    614 4mpj:A (1.5) BS03 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    615 4mpr:A (1.401) BS02 TPP 4.1.1.7 GO:0000287 ... P20906 24956165
    616 4mq5:A (1.502) BS02 TPP 4.1.1.7 GO:0000287 ... P20906 24956165
    617 4qpz:A (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    618 4qpz:A (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    619 4qpz:B (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    620 4qpz:B (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    621 4qpz:C (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    622 4qpz:C (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    623 4qpz:D (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    624 4qpz:D (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    625 4qpz:E (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    626 4qpz:E (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    627 4qpz:F (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    628 4qpz:F (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    629 4qpz:G (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    630 4qpz:G (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    631 4qpz:H (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    632 4qpz:H (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    633 4qq8:A (2.88) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    634 4qq8:A (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    635 4qq8:B (2.88) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    636 4qq8:B (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    637 4qq8:C (2.88) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    638 4qq8:C (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    639 4qq8:D (2.88) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    640 4qq8:D (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    641 4rji:A (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    642 4rji:A (3.2) BS03 TPP N/A GO:0000287 ... N/A 25393087
    643 4rji:B (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    644 4rji:B (3.2) BS02 TPP N/A GO:0000287 ... N/A 25393087
    645 4rji:C (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    646 4rji:C (3.2) BS03 TPP N/A GO:0000287 ... N/A 25393087
    647 4rji:D (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    648 4rji:D (3.2) BS02 TPP N/A GO:0000287 ... N/A 25393087
    649 4rjj:A (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    650 4rjj:A (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    651 4rjj:B (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    652 4rjj:B (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    653 4rjj:C (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    654 4rjj:C (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    655 4rjj:D (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    656 4rjj:D (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    657 4rjj:E (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    658 4rjj:E (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    659 4rjj:F (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    660 4rjj:F (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    661 4rjj:G (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    662 4rjj:G (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    663 4rjj:H (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    664 4rjj:H (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    665 4rjk:A (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    666 4rjk:A (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    667 4rjk:B (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    668 4rjk:B (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    669 4rjk:C (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    670 4rjk:C (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    671 4rjk:D (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    672 4rjk:D (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    673 4rjk:E (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    674 4rjk:E (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    675 4rjk:F (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    676 4rjk:F (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    677 4rjk:G (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    678 4rjk:H (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    679 4tkr:A (3.0023) BS01 TPP ? GO:0005886 ... A0A0B8R2U7 25286840
    680 4tkr:B (3.0023) BS01 TPP ? GO:0005886 ... A0A0B8R2U7 25286840
    681 4zp1:A (2.205) BS02 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    682 4zp1:A (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    683 4zp1:B (2.205) BS01 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    684 4zp1:B (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    685 4zp1:C (2.205) BS02 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    686 4zp1:C (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    687 4zp1:D (2.205) BS01 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    688 4zp1:D (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    689 5a65:A (1.98) BS03 TPP 3.6.1.28 GO:0000287 ... Q8JZL3 26221030
    690 5a65:B (1.98) BS03 TPP 3.6.1.28 GO:0000287 ... Q8JZL3 26221030
    691 5ahk:A (1.55) BS01 TPP 2.2.1.6 GO:0000166 ... Q4K6F7 N/A
    692 5ahk:A (1.55) BS04 TPP 2.2.1.6 GO:0000166 ... Q4K6F7 N/A
    693 5ahk:B (1.55) BS01 TPP 2.2.1.6 GO:0000166 ... Q4K6F7 N/A
    694 5ahk:B (1.55) BS02 TPP 2.2.1.6 GO:0000166 ... Q4K6F7 N/A
    695 5b46:A (2.1) BS01 TPP 1.2.7.11 GO:0003824 ... Q96XT2 27619895
    696 5b46:B (2.1) BS02 TPP 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    697 5b47:A (2.2) BS02 TPP 1.2.7.11 GO:0003824 ... Q96XT2 27619895
    698 5b47:B (2.2) BS02 TPP 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    699 5c4i:A (2.274) BS01 TPP 1.2.7.10 GO:0003824 ... Q2RI41 26061898
    700 5c4i:C (2.274) BS02 TPP 1.2.7.10 GO:0003824 ... Q2RI42 26061898
    701 5c4i:D (2.274) BS01 TPP 1.2.7.10 GO:0003824 ... Q2RI41 26061898
    702 5c4i:F (2.274) BS02 TPP 1.2.7.10 GO:0003824 ... Q2RI42 26061898
    703 5cm7:A (1.55) BS02 TPP 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    704 5cm7:B (1.55) BS01 TPP 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    705 5dei:A (1.3) BS02 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    706 5dei:A (1.3) BS06 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    707 5dei:B (1.3) BS02 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    708 5dei:B (1.3) BS06 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    709 5dei:C (1.3) BS01 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    710 5dei:C (1.3) BS05 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    711 5dei:D (1.3) BS02 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    712 5dei:D (1.3) BS05 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    713 5dgd:A (1.13) BS05 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    714 5dx6:B (1.75) BS03 TPP 2.2.1.6 GO:0000287 ... P27696 N/A
    715 5ej9:A (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    716 5ej9:B (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    717 5ej9:C (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    718 5ej9:D (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    719 5ej9:E (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    720 5ej9:E (1.72) BS03 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    721 5ej9:F (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    722 5ej9:F (1.72) BS02 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    723 5ej9:G (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    724 5ej9:G (1.72) BS03 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    725 5ej9:H (1.72) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 27213829
    726 5esd:A (2.25) BS02 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    727 5esd:A (2.25) BS03 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    728 5esd:B (2.25) BS01 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    729 5esd:B (2.25) BS03 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    730 5esd:C (2.25) BS01 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    731 5esd:C (2.25) BS02 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    732 5esd:D (2.25) BS01 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    733 5eso:A (2.05) BS02 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    734 5eso:B (2.05) BS03 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    735 5eso:C (2.05) BS03 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    736 5eso:D (2.05) BS03 TPP 2.2.1.9 GO:0000287 ... P9WK11 27291649
    737 5euj:A (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    738 5euj:A (2.15) BS04 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    739 5euj:B (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    740 5euj:B (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    741 5euj:C (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    742 5euj:C (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    743 5euj:D (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    744 5euj:D (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    745 5euj:E (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    746 5euj:E (2.15) BS04 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    747 5euj:F (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    748 5euj:F (2.15) BS04 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    749 5euj:G (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    750 5euj:G (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    751 5euj:H (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    752 5euj:H (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    753 5euj:I (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    754 5euj:I (2.15) BS04 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    755 5euj:J (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    756 5euj:J (2.15) BS04 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    757 5euj:K (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    758 5euj:K (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    759 5euj:L (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    760 5euj:L (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    761 5euj:M (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    762 5euj:M (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    763 5euj:N (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    764 5euj:N (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    765 5euj:O (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    766 5euj:O (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    767 5euj:P (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    768 5euj:P (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    769 5euj:Q (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    770 5euj:Q (2.15) BS04 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    771 5euj:R (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    772 5euj:R (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    773 5euj:S (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    774 5euj:S (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    775 5euj:T (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    776 5euj:T (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    777 5euj:U (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    778 5euj:U (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    779 5euj:V (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    780 5euj:V (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    781 5euj:W (2.15) BS02 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    782 5euj:W (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    783 5euj:X (2.15) BS01 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    784 5euj:X (2.15) BS03 TPP 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    785 5exd:A (2.5) BS01 TPP 1.2.7.10 GO:0003824 ... Q2RI41 26712008
    786 5exd:C (2.5) BS02 TPP 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    787 5exd:G (2.5) BS01 TPP 1.2.7.10 GO:0003824 ... Q2RI41 26712008
    788 5exd:I (2.5) BS02 TPP 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    789 5exd:J (2.5) BS01 TPP 1.2.7.10 GO:0003824 ... Q2RI41 26712008
    790 5exd:L (2.5) BS02 TPP 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    791 5fem:A (2.168) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 26924714
    792 5fem:A (2.168) BS07 TPP 2.2.1.6 GO:0000287 ... P07342 26924714
    793 5fem:B (2.168) BS02 TPP 2.2.1.6 GO:0000287 ... P07342 26924714
    794 5fem:B (2.168) BS07 TPP 2.2.1.6 GO:0000287 ... P07342 26924714
    795 5hht:A (1.5) BS02 TPP 2.2.1.1 GO:0000287 ... P27302 27767080
    796 5hht:A (1.5) BS03 TPP 2.2.1.1 GO:0000287 ... P27302 27767080
    797 5hht:B (1.5) BS01 TPP 2.2.1.1 GO:0000287 ... P27302 27767080
    798 5hht:B (1.5) BS02 TPP 2.2.1.1 GO:0000287 ... P27302 27767080
    799 5hje:A (1.4) BS01 TPP 2.2.1.1 GO:0003824 ... P34736 27578891
    800 5hyv:A (1.031) BS01 TPP 2.2.1.1 GO:0003824 ... P34736 27578891
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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