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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 189 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e6v:A (2.7) BS02 TP7 2.8.4.1 GO:0005737 ... Q49605 11023796
    2 1e6v:A (2.7) BS04 TP7 2.8.4.1 GO:0005737 ... Q49605 11023796
    3 1e6v:B (2.7) BS01 TP7 2.8.4.1 GO:0015948 ... Q49601 11023796
    4 1e6v:D (2.7) BS02 TP7 2.8.4.1 GO:0005737 ... Q49605 11023796
    5 1e6v:D (2.7) BS05 TP7 2.8.4.1 GO:0005737 ... Q49605 11023796
    6 1e6v:E (2.7) BS02 TP7 2.8.4.1 GO:0015948 ... Q49601 11023796
    7 1e6y:A (1.6) BS02 TP7 2.8.4.1 GO:0005737 ... P07962 11023796
    8 1e6y:A (1.6) BS05 TP7 2.8.4.1 GO:0005737 ... P07962 11023796
    9 1e6y:B (1.6) BS01 TP7 2.8.4.1 GO:0005737 ... P07955 11023796
    10 1e6y:D (1.6) BS02 TP7 2.8.4.1 GO:0005737 ... P07962 11023796
    11 1e6y:D (1.6) BS04 TP7 2.8.4.1 GO:0005737 ... P07962 11023796
    12 1e6y:E (1.6) BS02 TP7 2.8.4.1 GO:0005737 ... P07955 11023796
    13 1hbn:A (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    14 1hbn:A (1.16) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    15 1hbn:B (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    16 1hbn:D (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    17 1hbn:D (1.16) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    18 1hbn:E (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    19 1hbo:A (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    20 1hbo:A (1.78) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    21 1hbo:B (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    22 1hbo:D (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    23 1hbo:D (1.78) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    24 1hbo:E (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    25 1hbu:A (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    26 1hbu:A (1.9) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    27 1hbu:B (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    28 1hbu:D (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    29 1hbu:D (1.9) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    30 1hbu:E (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    31 1mro:A (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 9367957
    32 1mro:A (1.16) BS03 TP7 2.8.4.1 GO:0005737 ... P11558 9367957
    33 1mro:B (1.16) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 9367957
    34 1mro:D (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 9367957
    35 1mro:D (1.16) BS03 TP7 2.8.4.1 GO:0005737 ... P11558 9367957
    36 1mro:E (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 9367957
    37 3m1v:A (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    38 3m1v:A (1.45) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    39 3m1v:B (1.45) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    40 3m1v:D (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    41 3m1v:D (1.45) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    42 3m1v:E (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    43 3m2r:A (1.3) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    44 3m2r:A (1.3) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    45 3m2r:B (1.3) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    46 3m2r:D (1.3) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    47 3m2r:D (1.3) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    48 3m2r:E (1.3) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    49 3m2u:A (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    50 3m2u:A (1.4) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    51 3m2u:B (1.4) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    52 3m2u:D (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    53 3m2u:D (1.4) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    54 3m2u:E (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    55 3m2v:A (1.8) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    56 3m2v:A (1.8) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    57 3m2v:B (1.8) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    58 3m2v:D (1.8) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    59 3m2v:D (1.8) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    60 3m2v:E (1.8) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    61 3m30:A (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    62 3m30:A (1.45) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    63 3m30:B (1.45) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    64 3m30:D (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    65 3m30:D (1.45) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    66 3m30:E (1.45) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    67 3m32:A (1.35) BS01 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    68 3m32:A (1.35) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    69 3m32:B (1.35) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    70 3m32:D (1.35) BS01 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    71 3m32:D (1.35) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    72 3m32:E (1.35) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    73 3pot:A (1.2) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    74 3pot:A (1.2) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    75 3pot:B (1.2) BS03 TP7 2.8.4.1 GO:0005737 ... P11560 21438550
    76 3pot:D (1.2) BS03 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    77 3pot:D (1.2) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    78 3pot:E (1.2) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 21438550
    79 3sqg:A (2.1) BS01 TP7 2.8.4.1 GO:0015948 ... D1JBK4 22121022
    80 3sqg:A (2.1) BS04 TP7 2.8.4.1 GO:0015948 ... D1JBK4 22121022
    81 3sqg:B (2.1) BS01 TP7 2.8.4.1 GO:0015948 ... D1JBK2 22121022
    82 3sqg:D (2.1) BS01 TP7 2.8.4.1 GO:0015948 ... D1JBK4 22121022
    83 3sqg:D (2.1) BS03 TP7 2.8.4.1 GO:0015948 ... D1JBK4 22121022
    84 3sqg:E (2.1) BS02 TP7 2.8.4.1 GO:0015948 ... D1JBK2 22121022
    85 3sqg:G (2.1) BS02 TP7 2.8.4.1 GO:0015948 ... D1JBK4 22121022
    86 3sqg:H (2.1) BS02 TP7 2.8.4.1 GO:0015948 ... D1JBK2 22121022
    87 5a0y:A (1.1) BS03 TP7 2.8.4.1 GO:0005737 ... P11558 27467699
    88 5a0y:A (1.1) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 27467699
    89 5a0y:B (1.1) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 27467699
    90 5a0y:D (1.1) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 27467699
    91 5a0y:D (1.1) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 27467699
    92 5a0y:E (1.1) BS03 TP7 2.8.4.1 GO:0005737 ... P11560 27467699
    93 5a8k:A (1.41) BS02 TP7 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    94 5a8k:A (1.41) BS07 TP7 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    95 5a8k:B (1.41) BS02 TP7 2.8.4.1 GO:0015948 ... A0A1C7D1E2 27467699
    96 5a8k:D (1.41) BS01 TP7 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    97 5a8k:D (1.41) BS03 TP7 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    98 5a8k:E (1.41) BS01 TP7 2.8.4.1 GO:0015948 ... A0A1C7D1E2 27467699
    99 5a8r:A (2.15) BS02 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    100 5a8r:A (2.15) BS04 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    101 5a8r:B (2.15) BS02 TP7 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    102 5a8r:D (2.15) BS01 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    103 5a8r:D (2.15) BS04 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    104 5a8r:E (2.15) BS01 TP7 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    105 5a8r:G (2.15) BS02 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    106 5a8r:G (2.15) BS04 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    107 5a8r:H (2.15) BS02 TP7 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    108 5a8r:J (2.15) BS01 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    109 5a8r:J (2.15) BS04 TP7 2.8.4.1 GO:0015948 ... P58815 27467699
    110 5a8r:K (2.15) BS02 TP7 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    111 5a8w:A (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    112 5a8w:A (1.8) BS03 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    113 5a8w:B (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    114 5a8w:D (1.8) BS01 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    115 5a8w:D (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    116 5a8w:E (1.8) BS01 TP7 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    117 5a8w:G (1.8) BS03 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    118 5a8w:G (1.8) BS05 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    119 5a8w:H (1.8) BS03 TP7 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    120 5a8w:J (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    121 5a8w:J (1.8) BS05 TP7 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    122 5a8w:K (1.8) BS01 TP7 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    123 5g0r:A (1.25) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 27140643
    124 5g0r:A (1.25) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 27140643
    125 5g0r:B (1.25) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 27140643
    126 5g0r:D (1.25) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 27140643
    127 5g0r:D (1.25) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 27140643
    128 5g0r:E (1.25) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 27140643
    129 5n1q:A (1.9) BS01 TP7 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    130 5n1q:A (1.9) BS05 TP7 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    131 5n1q:B (1.9) BS01 TP7 2.8.4.1 GO:0005737 ... A0A247D6X4 28559298
    132 5n1q:D (1.9) BS01 TP7 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    133 5n1q:D (1.9) BS05 TP7 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    134 5n1q:E (1.9) BS03 TP7 2.8.4.1 GO:0005737 ... A0A247D6X4 28559298
    135 5n28:A (2.8) BS02 TP7 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    136 5n28:A (2.8) BS03 TP7 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    137 5n28:B (2.8) BS02 TP7 2.8.4.1 GO:0015948 ... H1KXL9 28559298
    138 5n28:D (2.8) BS01 TP7 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    139 5n28:D (2.8) BS02 TP7 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    140 5n28:E (2.8) BS01 TP7 2.8.4.1 GO:0015948 ... H1KXL9 28559298
    141 5n2a:A (2.8) BS02 TP7 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    142 5n2a:B (2.8) BS02 TP7 2.8.4.1 GO:0015948 ... H1KXL9 28559298
    143 5odh:H (2.2) BS04 TP7 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    144 5odr:H (2.2) BS04 TP7 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    145 7b1s:A (0.992) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    146 7b1s:A (0.992) BS06 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    147 7b1s:B (0.992) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    148 7b1s:D (0.992) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    149 7b1s:D (0.992) BS05 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    150 7b1s:E (0.992) BS02 TP7 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    151 7b2c:A (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    152 7b2c:A (1.8) BS04 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    153 7b2c:B (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    154 7b2c:D (1.8) BS02 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    155 7b2c:D (1.8) BS03 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    156 7b2c:E (1.8) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    157 7b2h:A (2.12) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 34210888
    158 7b2h:A (2.12) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 34210888
    159 7b2h:B (2.12) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 34210888
    160 7b2h:D (2.12) BS01 TP7 2.8.4.1 GO:0005737 ... P11558 34210888
    161 7b2h:D (2.12) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 34210888
    162 7b2h:E (2.12) BS03 TP7 2.8.4.1 GO:0005737 ... P11560 34210888
    163 7nkg:A (1.6) BS02 TP7 N/A GO:0015948 ... N/A 33919946
    164 7nkg:A (1.6) BS03 TP7 N/A GO:0015948 ... N/A 33919946
    165 7nkg:B (1.6) BS02 TP7 N/A GO:0015948 ... N/A 33919946
    166 7nkg:D (1.6) BS01 TP7 N/A GO:0015948 ... N/A 33919946
    167 7nkg:D (1.6) BS02 TP7 N/A GO:0015948 ... N/A 33919946
    168 7nkg:E (1.6) BS01 TP7 N/A GO:0015948 ... N/A 33919946
    169 7nkg:G (1.6) BS02 TP7 N/A GO:0015948 ... N/A 33919946
    170 7nkg:G (1.6) BS03 TP7 N/A GO:0015948 ... N/A 33919946
    171 7nkg:H (1.6) BS02 TP7 N/A GO:0015948 ... N/A 33919946
    172 7nkg:J (1.6) BS01 TP7 N/A GO:0015948 ... N/A 33919946
    173 7nkg:J (1.6) BS02 TP7 N/A GO:0015948 ... N/A 33919946
    174 7nkg:K (1.6) BS01 TP7 N/A GO:0015948 ... N/A 33919946
    175 7suc:A (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    176 7suc:A (1.9) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    177 7suc:B (1.9) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 35202981
    178 7suc:a (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    179 7suc:a (1.9) BS03 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    180 7suc:b (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 35202981
    181 7sxm:A (2.503) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    182 7sxm:A (2.503) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    183 7sxm:B (2.503) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 35202981
    184 7sxm:D (2.503) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    185 7sxm:D (2.503) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 35202981
    186 7sxm:E (2.503) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 35202981
    187 8gf5:A (3.0) BS03 TP7 2.8.4.1 GO:0005737 ... Q8THH1 37307484
    188 8gf5:B (3.0) BS02 TP7 2.8.4.1 GO:0005737 ... Q8THH1 37307484
    189 8gf5:C (3.0) BS03 TP7 2.8.4.1 GO:0015948 ... Q8THG7 37307484

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417