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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ev5:A (1.68) BS01 TMO 4.6.1.18 GO:0003676 ... P61823 19291738
    2 3o1h:B (3.1) BS01 TMO ? GO:0005515 ... Q87ID2 22483119
    3 3t25:A (1.7) BS02 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    4 3t28:A (2.8) BS02 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    5 3t28:A (2.8) BS03 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    6 3t28:A (2.8) BS04 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    7 3t29:A (1.75) BS02 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    8 3t29:A (1.75) BS03 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    9 3t29:A (1.75) BS04 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    10 3t29:A (1.75) BS05 TMO 3.4.21.4 GO:0004175 ... P00760 22194335
    11 4a0t:A (1.9) BS01 TMO ? N/A P03748 22645347
    12 4a0t:B (1.9) BS01 TMO ? N/A P03748 22645347
    13 4a0t:C (1.9) BS01 TMO ? N/A P03748 22645347
    14 4fl9:A (1.901) BS01 TMO 3.6.4.10 GO:0005524 ... P19120 N/A
    15 4fl9:A (1.901) BS02 TMO 3.6.4.10 GO:0005524 ... P19120 N/A
    16 4ob5:L (1.7) BS01 TMO ? GO:0002250 ... P01619 25254371
    17 4tsm:A (1.899) BS05 TMO ? GO:0005515 ... P0AEX9 25599642
    18 4tsm:A (1.899) BS06 TMO ? GO:0005515 ... P0AEX9 25599642
    19 4tsm:A (1.899) BS07 TMO ? GO:0005515 ... P0AEX9 25599642
    20 4tsm:A (1.899) BS08 TMO ? GO:0005515 ... P0AEX9 25599642
    21 4tsm:A (1.899) BS09 TMO ? GO:0005515 ... P0AEX9 25599642
    22 4tsm:A (1.899) BS10 TMO ? GO:0005515 ... P0AEX9 25599642
    23 4tsm:A (1.899) BS11 TMO ? GO:0005515 ... P0AEX9 25599642
    24 4tsm:B (1.899) BS05 TMO ? GO:0005515 ... P0AEX9 25599642
    25 4tsm:B (1.899) BS06 TMO ? GO:0005515 ... P0AEX9 25599642
    26 4tsm:B (1.899) BS07 TMO ? GO:0005515 ... P0AEX9 25599642
    27 4tsm:B (1.899) BS08 TMO ? GO:0005515 ... P0AEX9 25599642
    28 4tsm:C (1.899) BS05 TMO ? GO:0005515 ... P0AEX9 25599642
    29 4tsm:C (1.899) BS06 TMO ? GO:0005515 ... P0AEX9 25599642
    30 4tsm:C (1.899) BS07 TMO ? GO:0005515 ... P0AEX9 25599642
    31 4tsm:C (1.899) BS08 TMO ? GO:0005515 ... P0AEX9 25599642
    32 4tsm:C (1.899) BS09 TMO ? GO:0005515 ... P0AEX9 25599642
    33 4xz6:A (2.2) BS01 TMO ? GO:0022857 ... Q5LT66 26283766 MOAD: Kd=1.6uM
    34 4xz6:B (2.2) BS01 TMO ? GO:0022857 ... Q5LT66 26283766 MOAD: Kd=1.6uM
    35 5a3y:A (1.27) BS08 TMO 3.4.24.27 GO:0004222 ... P00800 26527148
    36 5dcd:A (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    37 5dcd:B (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    38 5dcd:C (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    39 5dcd:D (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    40 5eom:C (2.55) BS01 TMO 2.7.7.- GO:0001654 ... Q13394 27271801
    41 5eom:F (2.55) BS01 TMO 2.7.7.- GO:0001654 ... Q13394 27271801
    42 5n2w:A (2.68) BS09 TMO 2.3.2.31 GO:0004842 ... O60260 28414322
    43 5wlq:A (3.104) BS01 TMO ? GO:0008017 ... P12883
    P13848
    Q15691    		 28743637
    44 6b1b:A (1.944) BS01 TMO ? GO:0004497 ... A0A140NG21 31068633
    45 6b1b:B (1.944) BS01 TMO ? GO:0004497 ... A0A140NG21 31068633
    46 6b1b:B (1.944) BS02 TMO ? GO:0004497 ... A0A140NG21 31068633
    47 6b1b:B (1.944) BS03 TMO ? GO:0004497 ... A0A140NG21 31068633
    48 6fj2:A (1.43) BS06 TMO 3.4.24.27 GO:0004222 ... P00800 29979188
    49 6fj2:A (1.43) BS07 TMO 3.4.24.27 GO:0004222 ... P00800 29979188
    50 6g13:A (1.97) BS01 TMO ? GO:0003723 ... A0A0D3MU51 30644840
    51 6g13:B (1.97) BS01 TMO ? GO:0003723 ... A0A0D3MU51 30644840
    52 6h54:A (2.02) BS01 TMO 3.6.4.10 GO:0005524 ... P19120 38317495
    53 6t0e:A (1.89) BS04 TMO ? GO:0046872 ... B1ZMF4 31740581
    54 6t0e:B (1.89) BS02 TMO ? GO:0046872 ... B1ZMF4 31740581
    55 6t0e:B (1.89) BS03 TMO ? GO:0046872 ... B1ZMF4 31740581
    56 6trx:B (3.2) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 34188616
    57 6trx:B (3.2) BS03 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 34188616
    58 6trx:C (3.2) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 34188616
    59 6trx:C (3.2) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 34188616
    60 6w9g:L (1.82) BS01 TMO N/A N/A N/A 32845612
    61 6w9g:L (1.82) BS02 TMO N/A N/A N/A 32845612
    62 6w9g:M (1.82) BS01 TMO N/A N/A N/A 32845612
    63 6w9g:M (1.82) BS02 TMO N/A N/A N/A 32845612
    64 6w9g:Y (1.82) BS01 TMO N/A N/A N/A 32845612
    65 6w9g:Y (1.82) BS02 TMO N/A N/A N/A 32845612
    66 6w9g:Y (1.82) BS03 TMO N/A N/A N/A 32845612
    67 7a3g:A (2.8) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    68 7a3g:A (2.8) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    69 7a3g:A (2.8) BS04 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    70 7a3g:B (2.8) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    71 7a3i:A (2.8) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    72 7a3i:B (2.8) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    73 7a3i:C (2.8) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    74 7a3j:A (3.0) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    75 7a3j:B (3.0) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    76 7a3j:C (3.0) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    77 7a3k:A (2.65) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    78 7a3k:B (2.65) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    79 7a3k:C (2.65) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    80 7acm:A (1.763) BS01 TMO ? GO:0003677 ... P75811 34288132
    81 7acm:B (1.763) BS01 TMO ? GO:0003677 ... P75811 34288132
    82 7ayq:A (2.45) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    83 7ayq:B (2.45) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    84 7ayr:A (2.69) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    85 7ayr:B (2.69) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    86 7o6r:A (2.0) BS02 TMO 3.6.4.10 GO:0005524 ... P19120 38317495
    87 7or4:A (2.44) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    88 7or4:B (2.44) BS01 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    89 7oz7:A (2.6) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    90 7oz7:B (2.6) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36089535
    91 7sgm:L (2.0) BS01 TMO N/A N/A N/A 35033559
    92 7sgm:M (2.0) BS01 TMO N/A N/A N/A 35033559
    93 7sgm:Y (2.0) BS01 TMO N/A N/A N/A 35033559
    94 7svm:C (2.69) BS04 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36044633
    95 7svo:C (2.58) BS02 TMO 3.4.14.5 GO:0004177 ... Q6V1X1 36044633
    96 7vgb:A (2.227) BS01 TMO N/A GO:0004252 ... N/A 35647921
    97 7vgb:B (2.227) BS01 TMO N/A GO:0004252 ... N/A 35647921
    98 7yj5:A (1.701) BS01 TMO N/A GO:0009058 ... N/A 35920566
    99 7yxu:L (2.31) BS01 TMO N/A N/A N/A 36343381
    100 9bjy:A (1.58) BS01 TMO N/A N/A Q9HUA0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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