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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 223 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a2t:A (1.96) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    2 1a2u:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    3 1a3t:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    4 1a3u:A (2.05) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    5 1a3v:A (2.2) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    6 1aex:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    7 1cy1:A (2.3) BS02 THP 5.6.2.1 GO:0003677 ... P06612 10504732
    8 1enc:A (1.95) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8025105
    9 1jok:A (-1.00) BS01 THP 3.1.31.1 GO:0003676 ... P00644 9369015
    10 1joq:A (-1.00) BS01 THP 3.1.31.1 GO:0003676 ... P00644 9369015
    11 1nuc:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    12 1snc:A (1.65) BS02 THP 3.1.31.1 GO:0003676 ... P00644 2780539
    13 1snm:A (1.74) BS02 THP 3.1.31.1 GO:0003676 ... P00644 2397218
    14 1sta:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8019410
    15 1stb:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8019410
    16 1stg:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 7703245
    17 1sth:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 7703245
    18 1sty:A (1.67) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8475069
    19 1syb:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 2716830
    20 1syd:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8172877
    21 1syf:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8172877
    22 1tr5:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 15276844
    23 1tt2:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 15276844
    24 2enb:A (2.05) BS01 THP 3.1.31.1 GO:0003676 ... P00644 8025105
    25 2nuc:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    26 2oeo:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    27 2of1:A (1.92) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    28 2oxp:A (2.0) BS01 THP 3.1.31.1 GO:0003676 ... Q8NXI6 17172297
    29 2rbm:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    30 2snm:A (1.97) BS02 THP 3.1.31.1 GO:0003676 ... P00644 1920420
    31 2sns:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    32 3bdc:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 19533744
    33 3c1e:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    34 3c1f:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    35 3d4d:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    36 3d4d:B (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    37 3d6c:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 19324049
    38 3d8g:A (1.99) BS02 THP 3.1.31.1 GO:0003676 ... Q8NXI6 22080604
    39 3dhq:A (2.15) BS02 THP 3.1.31.1 GO:0003676 ... P00644 22080604
    40 3e5s:A (2.0) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    41 3e5s:B (2.0) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    42 3ero:A (1.85) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    43 3erq:A (2.1) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    44 3evq:A (2.0) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    45 3h6m:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    46 3hej:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    47 3hej:B (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    48 3hej:C (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    49 3hej:D (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    50 3hzx:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    51 3itp:A (1.75) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    52 3lx0:A (1.5) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    53 3meh:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    54 3mhb:A (1.55) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    55 3mvv:A (1.72) BS01 THP 3.1.31.1 GO:0003676 ... Q8NXI6 22496593
    56 3mxp:A (1.61) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    57 3mz5:A (1.58) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    58 3nhh:A (2.0) BS01 THP 3.1.31.1 GO:0003676 ... P00644 25074910
    59 3nk9:A (1.65) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    60 3np8:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    61 3nqt:A (1.9) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    62 3nuc:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    63 3nxw:A (1.65) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    64 3oso:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    65 3owf:A (1.85) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    66 3p1h:A (1.79) BS01 THP 3.1.31.1 N/A P00644 N/A
    67 3p75:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    68 3pmf:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    69 3qb3:A (1.63) BS01 THP 3.1.31.1 N/A P00644 N/A
    70 3qoj:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... Q8NXI6 N/A
    71 3qol:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... Q8NXI6 25074910
    72 3r3o:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... Q8NXI6 22496593
    73 3ruz:A (1.58) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    74 3s9w:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    75 3shl:A (1.48) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    76 3sk4:A (1.85) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    77 3sk5:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    78 3sk6:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    79 3sr1:A (1.45) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    80 3sxh:A (1.4) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    81 3tme:A (1.4) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    82 3tp5:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    83 3tp6:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    84 3tp7:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    85 3tp8:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    86 3v2t:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    87 3va5:A (1.55) BS02 THP 3.1.31.1 N/A P00644 N/A
    88 4df7:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    89 4dfa:A (1.404) BS02 THP 3.1.31.1 N/A P00644 N/A
    90 4dgz:A (1.47) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    91 4du9:A (1.63) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    92 4eqn:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    93 4eqo:A (1.697) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    94 4eqp:A (1.35) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    95 4f7x:A (1.7) BS02 THP 3.1.31.1 N/A P00644 N/A
    96 4f8m:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    97 4hmi:A (1.75) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    98 4hmj:A (1.35) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    99 4hth:A (1.75) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    100 4ial:A (1.595) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    101 4iun:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    102 4iz8:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    103 4j1m:A (1.65) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    104 4j6h:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    105 4k2k:A (1.65) BS02 THP 3.1.31.1 N/A P00644 N/A
    106 4k2l:A (1.55) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    107 4k5v:A (1.75) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    108 4k5w:A (1.65) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    109 4k5x:A (1.65) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    110 4k6d:A (1.65) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    111 4kd3:A (1.75) BS02 THP 3.1.31.1 N/A P00644 N/A
    112 4kd4:A (1.55) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    113 4khv:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    114 4kjn:A (1.55) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    115 4kjo:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    116 4kta:A (1.95) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    117 4kv6:A (1.55) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    118 4ky5:A (1.4) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    119 4ky6:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    120 4ky7:A (1.55) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    121 4laa:A (1.58) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    122 4me5:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    123 4miu:A (1.67) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    124 4n9p:A (1.4) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    125 4n9t:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    126 4ndx:A (1.496) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    127 4nkl:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    128 4nmz:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    129 4np5:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    130 4odg:A (1.73) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    131 4ol7:A (1.67) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    132 4ol7:B (1.67) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    133 4pmb:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    134 4pmc:A (1.65) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    135 4pny:A (1.68) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    136 4qf4:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    137 4qf4:B (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    138 4r8n:A (1.65) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    139 4rkb:A (1.88) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    140 4rkl:A (1.66) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    141 4s3s:A (1.64) BS01 THP 3.1.31.1 N/A P00644 N/A
    142 4trd:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    143 4wor:A (1.596) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9177191
    144 4wrd:A (1.65) BS02 THP 3.1.31.1 GO:0003676 ... Q5HHM4 N/A
    145 4yij:A (1.64) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    146 4yij:B (1.64) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    147 4zq3:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    148 4zui:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    149 4zuj:A (1.72) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    150 5c3w:A (1.72) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    151 5c3x:A (1.95) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    152 5c4h:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    153 5c4z:A (1.62) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    154 5c5l:A (1.75) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    155 5c5m:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    156 5c6a:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    157 5cc4:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    158 5cgk:A (1.85) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    159 5cr3:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    160 5cv4:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    161 5cv5:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    162 5cv5:B (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    163 5cv6:A (1.95) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    164 5cv7:A (1.65) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    165 5cv8:A (1.58) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    166 5cv9:A (1.62) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    167 5dau:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    168 5deh:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    169 5e1f:A (1.9) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    170 5e3f:A (1.75) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    171 5egt:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    172 5ekk:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    173 5ekl:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    174 5f2d:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    175 5hgt:A (1.75) BS02 THP 3.1.31.1 N/A P00644 N/A
    176 5hur:A (1.5) BS02 THP 3.1.31.1 N/A P00644 N/A
    177 5i6w:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    178 5i6y:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    179 5i9o:A (1.95) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    180 5i9o:B (1.95) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    181 5i9p:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    182 5igb:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    183 5igc:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    184 5igd:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    185 5ige:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    186 5igf:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    187 5igg:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    188 5iif:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    189 5ioc:A (1.9) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    190 5iod:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    191 5isr:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    192 5j1z:A (1.73) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    193 5j22:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    194 5jav:A (1.895) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    195 5job:A (1.45) BS01 THP 3.1.31.1 N/A P00644 N/A
    196 5k5p:A (1.83) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    197 5kee:A (1.5) BS02 THP 3.1.31.1 N/A P00644 N/A
    198 5kgu:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    199 5kix:A (1.75) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    200 5kru:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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