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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1iwo:A (3.1) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 12167852 BindingDB: Kd=0.200000nM, IC50=0.2nM
    2 1iwo:B (3.1) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 12167852 BindingDB: Kd=0.200000nM, IC50=0.2nM
    3 2agv:A (2.4) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 16150713 BindingDB: Kd=0.200000nM, IC50=0.2nM
    4 2agv:B (2.4) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 16150713 BindingDB: Kd=0.200000nM, IC50=0.2nM
    5 2c88:A (3.1) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 16710301 BindingDB: Kd=0.200000nM, IC50=0.2nM
    6 2c8k:A (2.8) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 16710301 BindingDB: Kd=0.200000nM, IC50=0.2nM
    7 2c8l:A (3.1) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 16710301 BindingDB: Kd=0.200000nM, IC50=0.2nM
    8 2ear:A (3.1) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 17389383 BindingDB: Kd=0.200000nM, IC50=0.2nM
    9 2eat:A (2.9) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 17389383 BindingDB: Kd=0.200000nM, IC50=0.2nM
    10 3ar3:A (2.3) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    11 3ar4:A (2.15) BS03 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    12 3ar5:A (2.2) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    13 3ar6:A (2.2) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    14 3ar7:A (2.15) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    15 3ar8:A (2.6) BS04 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    16 3ar9:A (2.6) BS04 TG1 7.2.2.10 GO:0000166 ... P04191 21239683 BindingDB: Kd=0.200000nM, IC50=0.2nM
    17 4uu0:A (2.5) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 25103814 BindingDB: Kd=0.200000nM, IC50=0.2nM
    18 4uu1:A (2.8) BS01 TG1 7.2.2.10 GO:0000166 ... P04191 25103814 BindingDB: Kd=0.200000nM, IC50=0.2nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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