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BioLiP
Download all results in tab-seperated text for 113 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a29:A (2.74) BS05 TFP ? GO:0000922 ... P62157 9799490 BindingDB: Kd=5000nM
    2 1a29:A (2.74) BS06 TFP ? GO:0000922 ... P62157 9799490 BindingDB: Kd=5000nM
    3 1ctr:A (2.45) BS05 TFP ? GO:0000086 ... P0DP23 7803388 PDBbind: -logKd/Ki=6.00, Kd=1uM
    BindingDB: Kd=1000nM
    4 1lin:A (2.0) BS05 TFP ? GO:0000922 ... P62157 7634090 BindingDB: Kd=5000nM
    5 1lin:A (2.0) BS06 TFP ? GO:0000922 ... P62157 7634090 BindingDB: Kd=5000nM
    6 1lin:A (2.0) BS07 TFP ? GO:0000922 ... P62157 7634090 BindingDB: Kd=5000nM
    7 1lin:A (2.0) BS08 TFP ? GO:0000922 ... P62157 7634090 BindingDB: Kd=5000nM
    8 1wrk:A (2.15) BS02 TFP ? GO:0005509 ... P63316 N/A
    9 1wrk:A (2.15) BS03 TFP ? GO:0005509 ... P63316 N/A
    10 1wrk:A (2.15) BS04 TFP ? GO:0005509 ... P63316 N/A
    11 1wrk:B (2.15) BS01 TFP ? GO:0005509 ... P63316 N/A
    12 1wrk:B (2.15) BS03 TFP ? GO:0005509 ... P63316 N/A
    13 1wrk:B (2.15) BS04 TFP ? GO:0005509 ... P63316 N/A
    14 1wrl:A (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    15 1wrl:A (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    16 1wrl:A (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    17 1wrl:B (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    18 1wrl:B (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    19 1wrl:B (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    20 1wrl:C (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    21 1wrl:C (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    22 1wrl:C (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    23 1wrl:D (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    24 1wrl:D (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    25 1wrl:D (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    26 1wrl:E (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    27 1wrl:E (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    28 1wrl:E (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    29 1wrl:F (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    30 1wrl:F (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    31 1wrl:F (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    32 3ko0:A (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    33 3ko0:A (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    34 3ko0:A (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    35 3ko0:A (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    36 3ko0:A (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    37 3ko0:B (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    38 3ko0:B (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    39 3ko0:B (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    40 3ko0:B (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    41 3ko0:C (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    42 3ko0:C (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    43 3ko0:C (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    44 3ko0:C (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    45 3ko0:C (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    46 3ko0:D (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    47 3ko0:D (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    48 3ko0:D (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    49 3ko0:D (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    50 3ko0:D (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    51 3ko0:E (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    52 3ko0:E (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    53 3ko0:E (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    54 3ko0:E (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    55 3ko0:E (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    56 3ko0:F (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    57 3ko0:F (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    58 3ko0:F (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    59 3ko0:G (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    60 3ko0:G (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    61 3ko0:H (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    62 3ko0:H (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    63 3ko0:H (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    64 3ko0:I (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    65 3ko0:I (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    66 3ko0:I (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    67 3ko0:I (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    68 3ko0:J (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    69 3ko0:J (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    70 3ko0:J (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    71 3ko0:J (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    72 3ko0:K (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    73 3ko0:K (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    74 3ko0:K (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    75 3ko0:L (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    76 3ko0:L (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    77 3ko0:L (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    78 3ko0:L (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    79 3ko0:M (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    80 3ko0:M (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    81 3ko0:N (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    82 3ko0:N (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    83 3ko0:N (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    84 3ko0:N (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    85 3ko0:N (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    86 3ko0:O (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    87 3ko0:O (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    88 3ko0:O (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    89 3ko0:O (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    90 3ko0:P (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    91 3ko0:P (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    92 3ko0:P (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    93 3ko0:P (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    94 3ko0:Q (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    95 3ko0:Q (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    96 3ko0:Q (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    97 3ko0:Q (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    98 3ko0:R (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    99 3ko0:R (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    100 3ko0:R (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    101 3ko0:R (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    102 3ko0:S (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    103 3ko0:S (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    104 3ko0:S (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    105 3ko0:S (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    106 3ko0:T (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    107 3ko0:T (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    108 3ko0:T (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    109 3ko0:T (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    110 4rjd:A (2.0) BS03 TFP ? GO:0005509 ... P0DP29 25694384
    111 4rjd:A (2.0) BS04 TFP ? GO:0005509 ... P0DP29 25694384
    112 4rjd:B (2.0) BS03 TFP ? GO:0005509 ... P0DP29 25694384
    113 4rjd:B (2.0) BS04 TFP ? GO:0005509 ... P0DP29 25694384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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