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BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g6u:A (1.48) BS01 TFA N/A N/A N/A 11171963
    2 1g6u:B (1.48) BS01 TFA N/A N/A N/A 11171963
    3 1n0q:B (1.26) BS01 TFA N/A N/A N/A 12461176
    4 1w70:B (1.46) BS02 TFA ? N/A Q15080 15657040
    5 1zzr:A (2.05) BS05 TFA 1.14.13.39 GO:0004517 ... P29476 16285725
    6 1zzr:B (2.05) BS06 TFA 1.14.13.39 GO:0004517 ... P29476 16285725
    7 2i0u:A (2.2) BS03 TFA 3.1.1.4 GO:0004623 ... Q1RP79 N/A
    8 2i0u:E (2.2) BS03 TFA 3.1.1.4 GO:0004623 ... Q1RP79 N/A
    9 2r9s:A (2.4) BS02 TFA 2.7.11.24 GO:0004672 ... P53779 17911023
    10 2r9s:B (2.4) BS02 TFA 2.7.11.24 GO:0004672 ... P53779 17911023
    11 2ra4:B (1.7) BS01 TFA ? GO:0005102 ... Q99616 18323622
    12 3gsh:A (1.8) BS02 TFA ? GO:0006869 ... P07597 19836358
    13 3gsh:B (1.8) BS01 TFA ? GO:0006869 ... P07597 19836358
    14 3kw9:A (1.8) BS02 TFA 3.4.22.38 GO:0006508 ... P43235 20149657
    15 3odv:A (0.95) BS01 TFA ? GO:0005576 ... P24662 20877851
    16 3odv:B (0.95) BS01 TFA ? GO:0005576 ... P24662 20877851
    17 3qtk:A (1.849) BS01 TFA ? GO:0008083 ... P15692 21744452
    18 3qtk:D (1.849) BS01 TFA ? GO:0008083 ... P15692 21744452
    19 3qtk:F (1.849) BS01 TFA ? GO:0008083 ... P15692 21744452
    20 4fvx:A (2.0) BS04 TFA 1.14.13.39 GO:0004517 ... P29476 23586781
    21 4fvx:B (2.0) BS06 TFA 1.14.13.39 GO:0004517 ... P29476 23586781
    22 4glu:D (1.9) BS01 TFA N/A N/A N/A 22927390
    23 4nhc:H (2.912) BS02 TFA N/A N/A N/A 25420104
    24 4nhc:L (2.912) BS02 TFA N/A N/A N/A 25420104
    25 4wpy:A (1.5) BS01 TFA ? N/A P9WLS2 25831534
    26 5ki9:A (1.6) BS01 TFA ? GO:0005576 ... Q8WTQ1 N/A
    27 5lws:A (1.03) BS02 TFA 3.4.23.22 GO:0004190 ... P11838 28097765
    28 5lwt:A (1.069) BS01 TFA 3.4.23.22 GO:0004190 ... P11838 28097765
    29 5lwu:A (1.109) BS01 TFA 3.4.23.22 GO:0004190 ... P11838 28097765
    30 5lwu:A (1.109) BS02 TFA 3.4.23.22 GO:0004190 ... P11838 28097765
    31 5oty:A (1.48) BS01 TFA 2.7.11.1 GO:0004672 ... P68400 29732088
    32 5otz:A (1.46) BS01 TFA 2.7.11.1 GO:0004672 ... P68400 29732088
    33 5oul:A (1.34) BS07 TFA 2.7.11.1 GO:0004672 ... P68400 29732088
    34 5paf:B (1.5) BS03 TFA 3.4.21.21 GO:0004252 ... P08709 N/A
    35 5rv1:A (1.0) BS01 TFA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    36 5srh:A (1.05) BS01 TFA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 36598939
    37 5srp:A (1.05) BS02 TFA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 36598939
    38 5v7y:A (2.05) BS02 TFA ? GO:0003674 ... A0A4Y1WAP5 28981257
    39 5v7y:C (2.05) BS02 TFA ? GO:0003674 ... A0A4Y1WAP5 28981257
    40 5v7y:D (2.05) BS02 TFA ? GO:0003674 ... A0A4Y1WAP5 28981257
    41 5vwv:A (1.897) BS02 TFA ? GO:0042981 ... Q16611 29149594
    42 6ay7:A (1.77) BS01 TFA ? GO:0005576 ... P45696 N/A
    43 6ay7:B (1.77) BS01 TFA ? GO:0005576 ... P45696 N/A
    44 6fmf:A (2.811) BS02 TFA ? N/A O14786 29648813
    45 6t57:H (1.57) BS04 TFA 3.4.21.5 GO:0004252 ... P00734 N/A
    46 6t9u:A (1.06751) BS02 TFA 3.4.21.4 GO:0004252 ... P00760 N/A
    47 6t9v:A (1.12643) BS01 TFA 3.4.21.4 GO:0004252 ... P00760 N/A
    48 6tqs:A (2.25) BS02 TFA ? N/A Q8NHP6 33124732
    49 6tqs:B (2.25) BS02 TFA ? N/A Q8NHP6 33124732
    50 6tqs:C (2.25) BS02 TFA ? N/A Q8NHP6 33124732
    51 6tqs:D (2.25) BS02 TFA ? N/A Q8NHP6 33124732
    52 6tqs:E (2.25) BS02 TFA ? N/A Q8NHP6 33124732
    53 6tqs:F (2.25) BS01 TFA ? N/A Q8NHP6 33124732
    54 7arr:A (1.1) BS01 TFA N/A N/A N/A 34032224
    55 7arr:B (1.1) BS01 TFA N/A N/A N/A 34032224
    56 7ars:A (1.15) BS02 TFA N/A N/A N/A 34032224
    57 7q8f:AA (1.49) BS02 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    58 7q8h:AA (1.75) BS02 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    59 7q8h:BA (1.75) BS02 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    60 7q8m:AA (1.57) BS02 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    61 7q8m:AA (1.57) BS03 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    62 7q8m:AA (1.57) BS04 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    63 7q9c:AA (1.4) BS03 TFA N/A GO:0006508 ... N/A 37095140
    64 7qfh:AA (1.52) BS02 TFA 3.4.22.43 GO:0006508 ... O60911 37095140
    65 7qns:AA (1.4) BS03 TFA 3.4.22.43 GO:0006508 ... O60911 N/A
    66 7qns:AA (1.4) BS04 TFA 3.4.22.43 GO:0006508 ... O60911 N/A
    67 8u2m:B (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    68 8u2m:B (1.79) BS04 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    69 8u2m:C (1.79) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    70 8u2m:C (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    71 8ukz:A (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    72 8ukz:A (1.95) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    73 8ukz:B (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    74 8ukz:C (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    75 9bju:K (2.47) BS01 TFA ? N/A Q15369 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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