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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2xyt:B (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    PDBbind: -logKd/Ki=6.29, Ki=509.2nM
    2 2xyt:C (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 PDBbind: -logKd/Ki=6.29, Ki=509.2nM
    3 2xyt:D (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    4 2xyt:E (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359
    5 2xyt:F (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    6 2xyt:G (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    7 2xyt:G (2.05) BS02 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    8 2xyt:H (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    9 2xyt:H (2.05) BS02 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    10 2xyt:I (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359
    11 7sms:A (3.18) BS03 TC9 ? GO:0004888 ... P02710 35301478
    12 7sms:B (3.18) BS01 TC9 ? GO:0004888 ... P02718 35301478
    13 7sms:C (3.18) BS01 TC9 ? GO:0004888 ... P02712 35301478
    14 7sms:D (3.18) BS01 TC9 ? GO:0004888 ... P02710 35301478
    15 7sms:D (3.18) BS03 TC9 ? GO:0004888 ... P02710 35301478
    16 7sms:E (3.18) BS01 TC9 ? GO:0004888 ... P02714 35301478
    17 7sms:E (3.18) BS02 TC9 ? GO:0004888 ... P02714 35301478
    18 7smt:D (2.56) BS01 TC9 ? GO:0004888 ... P02710 35301478
    19 7smt:E (2.56) BS01 TC9 ? GO:0004888 ... P02714 35301478
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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