Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2v15:A (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    2 2v15:B (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    3 2v15:C (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    4 2v15:D (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    5 2v15:E (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    6 2v15:F (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    7 2v15:G (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    8 2v15:H (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    9 2v15:I (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    10 2v15:J (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    11 2v15:K (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    12 2v15:L (2.1) BS01 TB 1.16.-.- GO:0005737 ... P0CB53 18552126
    13 5x7s:A (2.4) BS04 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    14 5x7s:A (2.4) BS05 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    15 5x7s:A (2.4) BS06 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    16 5x7s:A (2.4) BS07 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    17 5x7s:B (2.4) BS01 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    18 5x7s:B (2.4) BS05 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    19 5x7s:B (2.4) BS06 TB '2.4.1.-
    3.2.1.20'    		 GO:0003824 ... A0A193PKW5 28698247
    20 6frm:A (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    21 6frm:B (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    22 6frm:C (2.2) BS03 TB ? GO:0000166 ... A0A452CSW8 29806881
    23 6frm:D (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    24 6frm:E (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    25 6frm:F (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    26 6frm:G (2.2) BS03 TB ? GO:0000166 ... A0A452CSW8 29806881
    27 6frm:H (2.2) BS03 TB ? GO:0000166 ... A0A452CSW8 29806881
    28 6frn:A (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    29 6frn:B (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    30 6frn:C (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    31 6frn:D (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    32 6zv9:A (1.85) BS01 TB N/A N/A N/A 33203677
    33 6zv9:B (1.85) BS01 TB N/A N/A N/A 33203677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417