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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cjk:A (3.0) BS03 TAT 4.6.1.1 GO:0009190 ... P30803 10427002
    2 1cjk:B (3.0) BS01 TAT 4.6.1.1 GO:0009190 ... P26769 10427002
    3 1wc1:A (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    4 1wc1:B (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5 1wc1:B (1.93) BS04 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    6 1wc1:C (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    7 1wc1:C (1.93) BS02 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    8 1wc1:C (1.93) BS03 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    9 1wc6:A (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    10 1wc6:A (2.51) BS03 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    11 1wc6:B (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637
    12 1wc6:C (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    13 1wc6:C (2.51) BS02 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    14 3maa:A (3.0) BS03 TAT 4.6.1.1 GO:0009190 ... P30803 19243146
    15 3maa:B (3.0) BS02 TAT 4.6.1.1 GO:0009190 ... P26769 19243146
    16 5y0p:A (2.3) BS01 TAT 6.3.4.- GO:0000049 ... O34513 30150682
    17 5y0p:B (2.3) BS01 TAT 6.3.4.- GO:0000049 ... O34513 30150682
    18 5y0t:A (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    19 5y0t:B (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    20 5y0t:C (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    21 5y0t:D (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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