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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 176 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jff:B (3.5) BS02 TA1 ? GO:0000226 ... Q6B856 11700061
    2 2hxf:B (10.0) BS02 TA1 ? GO:0000226 ... P02554 16946706 BindingDB: EC50=520nM
    3 2hxh:B (11.0) BS02 TA1 ? GO:0000226 ... P02554 16946706 BindingDB: EC50=520nM
    4 2p4n:B (9.0) BS02 TA1 ? GO:0000226 ... Q6B856 17470637
    5 2wbe:B (9.4) BS03 TA1 ? GO:0000226 ... Q6B856 19285086
    6 3dco:B (11.0) BS02 TA1 ? GO:0000226 ... Q6B856 19135893
    7 3edl:B (28.0) BS02 TA1 ? GO:0000226 ... P02554 19000825 BindingDB: EC50=520nM
    8 3iz0:B (8.6) BS02 TA1 ? GO:0000226 ... Q6B856 20944740
    9 3j6g:B (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    10 3j6g:D (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    11 3j6g:F (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    12 3j6g:H (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    13 3j6g:J (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    14 3j6g:L (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    15 3j6g:N (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    16 3j6g:P (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    17 3j6g:R (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    18 3j6p:B (8.2) BS02 TA1 ? GO:0000226 ... P02554 25583999 BindingDB: EC50=520nM
    19 4aqv:B (9.7) BS01 TA1 ? GO:0000226 ... Q6B856 23135273
    20 4aqw:B (9.5) BS01 TA1 ? GO:0000226 ... Q6B856 23135273
    21 4ck5:B (10.0) BS01 TA1 ? GO:0000226 ... Q6B856 24449904
    22 4ck6:B (9.2) BS01 TA1 ? GO:0000226 ... Q6B856 24449904
    23 4ck7:B (9.2) BS01 TA1 ? GO:0000226 ... Q6B856 24449904
    24 4uxo:B (6.3) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    25 4uxp:B (6.3) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    26 4uxr:B (7.0) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    27 4uxs:B (7.0) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    28 4uxt:B (7.4) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    29 4uxy:B (6.5) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    30 4uy0:B (7.7) BS01 TA1 ? GO:0000226 ... Q6B856 25209998
    31 5hnw:B (6.6) BS02 TA1 ? GO:0000226 ... Q6B856 27452403
    32 5hnx:B (6.6) BS02 TA1 ? GO:0000226 ... Q6B856 27452403
    33 5hny:B (6.3) BS02 TA1 ? GO:0000226 ... Q6B856 27452403
    34 5hnz:B (5.8) BS02 TA1 ? GO:0000226 ... Q6B856 27452403
    35 5m50:B (5.3) BS02 TA1 ? GO:0000226 ... Q6B856 28991265
    36 5m50:E (5.3) BS02 TA1 ? GO:0000226 ... Q6B856 28991265
    37 5m54:B (8.0) BS02 TA1 ? GO:0000226 ... Q6B856 28991265
    38 5m54:E (8.0) BS02 TA1 ? GO:0000226 ... Q6B856 28991265
    39 5m5c:B (4.8) BS02 TA1 ? GO:0000226 ... Q6B856 28991265
    40 5m5c:E (4.8) BS02 TA1 ? GO:0000226 ... Q6B856 28991265
    41 5m5i:B (9.3) BS02 TA1 ? GO:0000226 ... Q6B856 27834216
    42 5m5l:B (9.3) BS02 TA1 ? GO:0000226 ... Q6B856 27834216
    43 5m5m:B (9.3) BS02 TA1 ? GO:0000226 ... Q6B856 27834216
    44 5m5n:B (9.3) BS02 TA1 ? GO:0000226 ... Q6B856 27834216
    45 5m5o:B (9.3) BS02 TA1 ? GO:0000226 ... Q6B856 27834216
    46 5mm4:B (4.5) BS01 TA1 ? GO:0000226 ... P02554 31288039 BindingDB: EC50=520nM
    47 5mm7:B (5.1) BS01 TA1 ? GO:0000226 ... P02554 31288039 BindingDB: EC50=520nM
    48 5nd2:B (5.8) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    49 5nd3:B (6.1) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    50 5nd4:B (4.4) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    51 5nd7:B (7.9) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    52 5oam:B (5.5) BS02 TA1 ? GO:0000226 ... P02554 29078367 BindingDB: EC50=520nM
    53 5ocu:B (5.2) BS02 TA1 ? GO:0000226 ... P02554 29078367 BindingDB: EC50=520nM
    54 5ogc:B (4.8) BS02 TA1 ? GO:0000226 ... P02554 29078367 BindingDB: EC50=520nM
    55 5sye:B (3.5) BS02 TA1 ? GO:0000226 ... P02554 28104363 BindingDB: EC50=520nM
    56 5syf:B (3.5) BS02 TA1 ? GO:0000226 ... P02554 28104363 BindingDB: EC50=520nM
    57 5w3j:B (4.0) BS02 TA1 ? GO:0000022 ... P02557 28652389
    58 6b0c:D (3.51) BS02 TA1 ? GO:0000226 ... P02554 29695795 BindingDB: EC50=520nM
    59 6b0i:B (3.78) BS02 TA1 ? GO:0000226 ... P02554 29695795 BindingDB: EC50=520nM
    60 6b0l:B (3.98) BS02 TA1 ? GO:0000226 ... P02554 29695795 BindingDB: EC50=520nM
    61 6ew0:B (3.8) BS01 TA1 ? GO:0000226 ... P02554 29967541 BindingDB: EC50=520nM
    62 6ew0:D (3.8) BS01 TA1 ? GO:0000226 ... P02554 29967541 BindingDB: EC50=520nM
    63 6ew0:F (3.8) BS02 TA1 ? GO:0000226 ... P02554 29967541 BindingDB: EC50=520nM
    64 6ew0:G (3.8) BS01 TA1 ? GO:0000226 ... P02554 29967541 BindingDB: EC50=520nM
    65 6ew0:H (3.8) BS01 TA1 ? GO:0000226 ... P02554 29967541 BindingDB: EC50=520nM
    66 6ew0:I (3.8) BS01 TA1 ? GO:0000226 ... P02554 29967541 BindingDB: EC50=520nM
    67 6i2i:B (3.6) BS02 TA1 ? GO:0000226 ... P07437 31409757
    68 6mlq:B (4.2) BS02 TA1 ? GO:0000226 ... P02554 31031197 BindingDB: EC50=520nM
    69 6mlr:B (4.2) BS02 TA1 ? GO:0000226 ... P02554 31031197 BindingDB: EC50=520nM
    70 6qex:A (3.6) BS11 TA1 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 30765569 BindingDB: IC50=53900nM
    71 6qus:S (3.7) BS02 TA1 ? GO:0000226 ... P07437 31748546
    72 6qus:U (3.7) BS02 TA1 ? GO:0000226 ... P07437 31748546
    73 6quy:G (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    74 6quy:H (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    75 6qve:G (3.7) BS03 TA1 ? GO:0000226 ... P07437 31748546
    76 6qve:H (3.7) BS02 TA1 ? GO:0000226 ... P07437 31748546
    77 6qvj:S (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    78 6qvj:U (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    79 6rza:B (4.5) BS02 TA1 ? GO:0000226 ... P02554 31264960 BindingDB: EC50=520nM
    80 6rza:D (4.5) BS02 TA1 ? GO:0000226 ... P02554 31264960 BindingDB: EC50=520nM
    81 6rzb:B (4.1) BS02 TA1 ? GO:0000226 ... P02554 31264960 BindingDB: EC50=520nM
    82 6ve7:4 (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    83 6ve7:8 (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    84 6ve7:9 (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    85 6ve7:J (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    86 6ve7:V (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    87 6ve7:a (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    88 6ve7:b (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    89 6ve7:i (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    90 6ve7:j (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    91 6ve7:p (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    92 6ve7:q (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    93 6ve7:r (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    94 6ve7:t (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    95 6ve7:u (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    96 6ve7:v (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    97 6ve7:w (3.6) BS02 TA1 ? GO:0003924 ... P04690 31951202
    98 6wvl:B (3.2) BS02 TA1 ? GO:0000226 ... Q6B856 32636254
    99 6wvl:D (3.2) BS02 TA1 ? GO:0000226 ... Q6B856 32636254
    100 6wvm:B (3.3) BS02 TA1 ? GO:0000226 ... Q6B856 32636254
    101 6wvm:D (3.3) BS02 TA1 ? GO:0000226 ... Q6B856 32636254
    102 6wvr:B (2.9) BS02 TA1 ? GO:0000226 ... Q6B856 32636254
    103 6wvr:D (2.9) BS02 TA1 ? GO:0000226 ... Q6B856 32636254
    104 6wwe:B (3.9) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    105 6wwf:B (3.3) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    106 6wwg:B (2.9) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    107 6wwg:I (2.9) BS03 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    108 6wwh:B (3.8) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    109 6wwh:I (3.8) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    110 6wwi:B (3.6) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    111 6wwj:B (3.4) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    112 6wwk:B (3.0) BS03 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    113 6wwk:I (3.0) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    114 6wwl:B (3.1) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    115 6wwl:I (3.1) BS03 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    116 6wwm:B (2.8) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    117 6wwn:B (3.5) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    118 6wwo:B (2.8) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    119 6wwp:B (3.1) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    120 6wwq:B (3.0) BS03 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    121 6wwr:B (2.7) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    122 6wws:B (2.7) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    123 6wwt:B (3.2) BS03 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    124 6wwu:B (2.7) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    125 6wwv:B (3.1) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    126 6zpi:B (4.5) BS02 TA1 ? GO:0000226 ... P02554 33252036 BindingDB: EC50=520nM
    127 7lvq:B (2.9) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    128 7lvr:B (2.9) BS02 TA1 ? GO:0003924 ... A0A287AZ37 34131133
    129 7rs5:B (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    130 7rs5:D (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    131 7rs5:F (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    132 7rs5:H (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    133 7rs5:J (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    134 7rs5:M (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    135 7rs5:O (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    136 7rs5:Q (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    137 7rs5:S (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    138 7tqx:B (2.8) BS02 TA1 ? GO:0000226 ... P02554 35859148
    139 7tqy:B (2.6) BS02 TA1 ? GO:0000226 ... P02554 35859148
    140 7tqz:B (2.7) BS02 TA1 ? GO:0000226 ... P02554 35859148
    141 7tr0:B (2.7) BS02 TA1 ? GO:0000226 ... P02554 35859148
    142 7tr1:B (3.1) BS03 TA1 ? GO:0000226 ... P02554 35859148
    143 7tr2:B (3.0) BS02 TA1 ? GO:0000226 ... P02554 35859148
    144 8c5c:a (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    145 8c5c:b (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    146 8c5c:c (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    147 8c5c:d (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    148 8c5c:e (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    149 8c5c:f (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    150 8c5c:g (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    151 8c5c:h (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    152 8c5c:i (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    153 8c5c:j (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    154 8c5c:k (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    155 8c5c:l (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    156 8c5c:m (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    157 8f18:B (3.2) BS02 TA1 ? GO:0003924 ... A0A287AGU7 37726093
    158 8f1a:B (3.1) BS02 TA1 ? GO:0003924 ... A0A287AGU7 37726093
    159 8qau:D (3.54) BS02 TA1 ? GO:0000226 ... P02554 N/A
    160 8utn:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    161 8utn:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    162 8uto:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    163 8uto:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    164 8utp:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    165 8utp:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    166 8utq:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    167 8utq:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    168 8utr:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    169 8uts:B (2.7) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    170 8utt:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    171 8utt:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    172 8utu:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    173 8utv:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    174 8utw:B (3.4) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    175 8uty:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    176 8uty:I (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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