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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8dqp:A (2.48) BS01 T83 ? GO:0009805 ... Q8LF28 36737607
    2 8j2s:A () BS02 T83 2.4.1.- N/A N/A N/A
    3 8j2s:B () BS02 T83 2.4.1.- N/A N/A N/A
    4 8j2s:C () BS02 T83 2.4.1.- N/A N/A N/A
    5 8j2s:D () BS02 T83 2.4.1.- N/A N/A N/A
    6 8j2s:F () BS02 T83 2.4.1.- N/A N/A N/A
    7 8j2t:A () BS01 T83 2.4.1.- N/A N/A N/A
    8 8j2t:B () BS01 T83 2.4.1.- N/A N/A N/A
    9 8j2v:A (2.0) BS01 T83 2.4.1.- GO:0000166 ... A0A8K1ZRH3 N/A
    10 9j9c:A (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    11 9j9c:B (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    12 9j9c:C (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    13 9j9c:D (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    14 9j9c:F (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    15 9j9k:A (3.15) BS01 T83 N/A N/A A0A8K1ZRH3 N/A
    16 9j9k:B (3.15) BS01 T83 N/A N/A A0A8K1ZRH3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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