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BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2xys:A (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    2 2xys:A (1.909) BS02 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    3 2xys:B (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    4 2xys:B (1.909) BS02 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    5 2xys:C (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    6 2xys:D (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    7 2xys:D (1.909) BS02 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    8 2xys:E (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    9 3jad:A (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    10 3jad:A (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    11 3jad:B (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    12 3jad:B (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    13 3jad:C (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    14 3jad:C (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    15 3jad:D (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    16 3jad:D (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    17 3jad:E (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    18 3jad:E (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    19 5cfb:A (3.04) BS01 SY9 ? GO:0004888 ... O75311 26416729 PDBbind: -logKd/Ki=7.28, Kd=52nM
    20 5cfb:A (3.04) BS02 SY9 ? GO:0004888 ... O75311 26416729 PDBbind: -logKd/Ki=7.28, Kd=52nM
    21 5cfb:B (3.04) BS01 SY9 ? GO:0004888 ... O75311 26416729 PDBbind: -logKd/Ki=7.28, Kd=52nM
    22 5cfb:B (3.04) BS02 SY9 ? GO:0004888 ... O75311 26416729 PDBbind: -logKd/Ki=7.28, Kd=52nM
    23 5cfb:C (3.04) BS01 SY9 ? GO:0004888 ... O75311 26416729
    24 5cfb:C (3.04) BS02 SY9 ? GO:0004888 ... O75311 26416729
    25 5cfb:D (3.04) BS01 SY9 ? GO:0004888 ... O75311 26416729
    26 5cfb:D (3.04) BS02 SY9 ? GO:0004888 ... O75311 26416729
    27 5cfb:E (3.04) BS01 SY9 ? GO:0004888 ... O75311 26416729
    28 5cfb:E (3.04) BS02 SY9 ? GO:0004888 ... O75311 26416729
    29 5o8t:A (2.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057 PDBbind: -logKd/Ki=7.13, Kd=74.1nM
    30 5o8t:A (2.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057 PDBbind: -logKd/Ki=7.13, Kd=74.1nM
    31 5o8t:B (2.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057 PDBbind: -logKd/Ki=7.13, Kd=74.1nM
    32 5o8t:C (2.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    33 5o8t:D (2.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    34 5o8t:E (2.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    35 5oa0:A (2.6) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    36 5oa0:A (2.6) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    37 5oa0:B (2.6) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    38 5oa0:B (2.6) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    39 5oa0:C (2.6) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    40 5oa0:C (2.6) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    41 5oa0:D (2.6) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    42 5oa0:D (2.6) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    43 5oa0:E (2.6) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    44 5oa0:E (2.6) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    45 5oal:A (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    46 5oal:A (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    47 5oal:B (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    48 5oal:B (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    49 5oal:C (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    50 5oal:C (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    51 5oal:D (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    52 5oal:D (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    53 5oal:E (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    54 5oal:E (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    55 5oal:F (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    56 5oal:F (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    57 5oal:G (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    58 5oal:G (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    59 5oal:H (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    60 5oal:H (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    61 5oal:I (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    62 5oal:I (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    63 5oal:J (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    64 5oal:J (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    65 5oal:K (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    66 5oal:K (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    67 5oal:L (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    68 5oal:L (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    69 5oal:M (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    70 5oal:M (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    71 5oal:N (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    72 5oal:N (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    73 5oal:O (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    74 5oal:O (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    75 5obg:A (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057 PDBbind: -logKd/Ki=7.13, Kd=74.1nM
    76 5obg:B (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057 PDBbind: -logKd/Ki=7.13, Kd=74.1nM
    77 5obg:C (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    78 5obg:D (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    79 5obg:D (2.0) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    80 5obg:E (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    81 7kuy:A (3.6) BS01 SY9 ? GO:0004888 ... P23416 N/A
    82 7kuy:A (3.6) BS02 SY9 ? GO:0004888 ... P23416 N/A
    83 7kuy:B (3.6) BS01 SY9 ? GO:0004888 ... P23416 N/A
    84 7kuy:B (3.6) BS02 SY9 ? GO:0004888 ... P23416 N/A
    85 7kuy:C (3.6) BS01 SY9 ? GO:0004888 ... P23416 N/A
    86 7kuy:C (3.6) BS02 SY9 ? GO:0004888 ... P23416 N/A
    87 7kuy:D (3.6) BS01 SY9 ? GO:0004888 ... P23416 N/A
    88 7kuy:D (3.6) BS02 SY9 ? GO:0004888 ... P23416 N/A
    89 7kuy:E (3.6) BS01 SY9 ? GO:0003674 ... P42212
    P48167    		 N/A
    90 7kuy:E (3.6) BS02 SY9 ? GO:0003674 ... P42212
    P48167    		 N/A
    91 7l31:A (3.8) BS01 SY9 ? GO:0004888 ... P23416 N/A
    92 7l31:A (3.8) BS02 SY9 ? GO:0004888 ... P23416 N/A
    93 7l31:B (3.8) BS01 SY9 ? GO:0004888 ... P23416 N/A
    94 7l31:B (3.8) BS02 SY9 ? GO:0004888 ... P23416 N/A
    95 7l31:C (3.8) BS01 SY9 ? GO:0004888 ... P23416 N/A
    96 7l31:C (3.8) BS02 SY9 ? GO:0004888 ... P23416 N/A
    97 7l31:D (3.8) BS01 SY9 ? GO:0004888 ... P23416 N/A
    98 7l31:D (3.8) BS02 SY9 ? GO:0004888 ... P23416 N/A
    99 7l31:E (3.8) BS01 SY9 ? GO:0003674 ... P42212
    P48167    		 N/A
    100 7l31:E (3.8) BS02 SY9 ? GO:0003674 ... P42212
    P48167    		 N/A
    101 7tu9:A (3.0) BS01 SY9 ? GO:0004888 ... O93430 N/A
    102 7tu9:A (3.0) BS03 SY9 ? GO:0004888 ... O93430 N/A
    103 7tu9:B (3.0) BS01 SY9 ? GO:0004888 ... O93430 N/A
    104 7tu9:B (3.0) BS02 SY9 ? GO:0004888 ... O93430 N/A
    105 7tu9:C (3.0) BS01 SY9 ? GO:0004888 ... O93430 N/A
    106 7tu9:C (3.0) BS02 SY9 ? GO:0004888 ... O93430 N/A
    107 7tu9:D (3.0) BS01 SY9 ? GO:0004888 ... O93430 N/A
    108 7tu9:D (3.0) BS03 SY9 ? GO:0004888 ... O93430 N/A
    109 7tu9:E (3.0) BS01 SY9 ? GO:0004888 ... Q6DC22 N/A
    110 7tu9:E (3.0) BS02 SY9 ? GO:0004888 ... Q6DC22 N/A
    111 7xp6:R (3.01) BS01 SY9 ?
    3.2.1.4    		 GO:0001580 ... P16218
    P59540    		 36108005
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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