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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ha2:A (2.5) BS01 SWF ? GO:0003677 ... P02768 11285262 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    2 1og5:A (2.55) BS02 SWF 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    3 1og5:B (2.55) BS02 SWF 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    4 6wv3:A (2.197) BS01 SWF 1.17.4.4 GO:0005515 ... P42212
    Q9BQB6    		 33154105
    5 6wv4:A (3.012) BS01 SWF 1.17.4.4 GO:0005515 ... P42212
    Q9BQB6    		 33154105
    6 6wvb:A (2.872) BS01 SWF ?
    1.17.4.4    		 GO:0005783 ... P42212
    Q6TEK8    		 33154105
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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