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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cgz:A (1.7) BS01 STL 2.3.1.74 GO:0009058 ... P30074 10426957
    2 1dvs:A (2.0) BS01 STL ? GO:0005179 ... P02766 10742177 BindingDB: Kd=470nM
    3 1sg0:A (1.5) BS03 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    4 1sg0:A (1.5) BS04 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    5 1sg0:B (1.5) BS01 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    6 1sg0:B (1.5) BS04 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    7 1u0w:A (2.0) BS01 STL 2.3.1.74 GO:0009058 ... P30074 15380179
    8 1u0w:B (2.0) BS01 STL 2.3.1.74 GO:0009058 ... P30074 15380179
    9 1u0w:C (2.0) BS01 STL 2.3.1.74 GO:0009058 ... P30074 15380179
    10 1u0w:D (2.0) BS01 STL 2.3.1.74 GO:0009058 ... P30074 15380179
    11 1z1f:A (2.9) BS01 STL 2.3.1.95 GO:0009058 ... Q9SLV5 16028220
    12 2jiz:F (2.3) BS02 STL 7.1.2.2 GO:0005515 ... P00829 17698806
    13 2jiz:G (2.3) BS01 STL 3.6.1.34 GO:0005515 ... P05631 17698806
    14 2jiz:M (2.3) BS02 STL 7.1.2.2 GO:0005515 ... P00829 17698806
    15 2jiz:N (2.3) BS01 STL 3.6.1.34 GO:0005515 ... P05631 17698806
    16 2l98:A (-1.00) BS03 STL ? GO:0005509 ... P63316 21226534 PDBbind: -logKd/Ki=3.61, Kd=243uM
    17 2ydx:A (2.8) BS01 STL ? GO:0005515 ... Q9NZL9 23425511
    18 2ydx:A (2.8) BS02 STL ? GO:0005515 ... Q9NZL9 23425511
    19 2ydx:A (2.8) BS05 STL ? GO:0005515 ... Q9NZL9 23425511
    20 2ydx:B (2.8) BS01 STL ? GO:0005515 ... Q9NZL9 23425511
    21 2ydx:B (2.8) BS02 STL ? GO:0005515 ... Q9NZL9 23425511
    22 2ydx:C (2.8) BS01 STL ? GO:0005515 ... Q9NZL9 23425511
    23 2ydx:C (2.8) BS02 STL ? GO:0005515 ... Q9NZL9 23425511
    24 2ydx:C (2.8) BS03 STL ? GO:0005515 ... Q9NZL9 23425511
    25 2ydx:D (2.8) BS01 STL ? GO:0005515 ... Q9NZL9 23425511
    26 2ydx:D (2.8) BS02 STL ? GO:0005515 ... Q9NZL9 23425511
    27 2ydx:D (2.8) BS04 STL ? GO:0005515 ... Q9NZL9 23425511
    28 2ydx:E (2.8) BS01 STL ? GO:0005515 ... Q9NZL9 23425511
    29 2ydx:E (2.8) BS02 STL ? GO:0005515 ... Q9NZL9 23425511
    30 2ydx:E (2.8) BS03 STL ? GO:0005515 ... Q9NZL9 23425511
    31 3ckl:A (2.0) BS01 STL 2.8.2.1 GO:0004062 ... O43704 N/A
    32 3ckl:B (2.0) BS01 STL 2.8.2.1 GO:0004062 ... O43704 N/A
    33 3fts:A (2.33) BS02 STL 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 19618939 MOAD: ic50=212uM
    PDBbind: -logKd/Ki=3.67, IC50=212uM
    BindingDB: IC50=366000nM
    34 3mnq:A (2.2) BS03 STL 3.6.4.1 GO:0003774 ... P08799 N/A
    35 4dpn:A (2.55) BS03 STL ? GO:0005515 ... P81460 N/A
    36 4hda:B (2.601) BS03 STL 2.3.1.- GO:0036054 ... Q9NXA8 23185430
    37 4jaz:A (2.85) BS01 STL ? GO:0003677 ... P37231 24796862 PDBbind: -logKd/Ki=5.04, Kd=9.17uM
    38 4pp6:A (2.201) BS02 STL ? N/A P03372 24771768 BindingDB: Ki=785nM
    39 4pp6:B (2.201) BS02 STL ? N/A P03372 24771768 BindingDB: Ki=785nM
    40 4q93:A (2.1) BS01 STL 6.1.1.1 GO:0000166 ... P54577 25533949 PDBbind: -logKd/Ki=4.65, Ki=22.3uM
    41 4qer:A (1.2) BS01 STL 3.1.1.4 GO:0004623 ... P59071 25541253 PDBbind: -logKd/Ki=7.54, Kd=29nM
    42 4qoh:A (1.6) BS02 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    43 4qoh:A (1.6) BS04 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    44 4qoh:B (1.6) BS01 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    45 4qoh:B (1.6) BS03 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    46 4qoj:A (1.85) BS02 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    47 4qoj:A (1.85) BS04 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    48 4qoj:B (1.85) BS01 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    49 4qoj:B (1.85) BS03 STL 1.10.5.1 GO:0001512 ... P16083 N/A BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    50 5btr:A (3.2) BS04 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    51 5btr:A (3.2) BS05 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    52 5btr:A (3.2) BS06 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    53 5btr:B (3.2) BS04 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    54 5btr:B (3.2) BS05 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    55 5btr:B (3.2) BS06 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    56 5btr:C (3.2) BS03 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    57 5btr:C (3.2) BS04 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    58 5btr:C (3.2) BS05 STL 2.3.1.-
    2.3.1.286    		 GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    59 5cr1:B (1.545) BS01 STL ? GO:0005179 ... P02766 26468275 BindingDB: Kd=470nM
    60 5j54:A (1.89) BS03 STL 1.13.11.- GO:0010436 ... Q2GA76 27911781
    61 5nzl:A (2.4) BS01 STL 2.7.7.9 GO:0003983 ... Q4QDU3 N/A
    62 5u90:A (1.9) BS02 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    63 5u90:A (1.9) BS03 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    64 5u90:A (1.9) BS04 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    65 5u90:B (1.9) BS02 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    66 5u90:C (1.9) BS02 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    67 5u90:D (1.9) BS02 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    68 5u90:D (1.9) BS03 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    69 5u90:D (1.9) BS04 STL 1.13.11.- GO:0010436 ... Q7S860 28493664
    70 6jem:A (2.6) BS02 STL 2.4.1.- GO:0008194 ... B5MGN7 32525309
    71 6jem:B (2.6) BS02 STL 2.4.1.- GO:0008194 ... B5MGN7 32525309
    72 6jem:C (2.6) BS02 STL 2.4.1.- GO:0008194 ... B5MGN7 32525309
    73 7ccu:A (1.649) BS01 STL 2.7.11.1 GO:0004672 ... P53355 N/A
    74 7ccw:A (1.4) BS01 STL 2.7.11.1 GO:0004672 ... P53355 N/A
    75 7k1c:A (1.9) BS01 STL ? GO:0000976 ... Q9AIU0 34548494
    76 7k1c:B (1.9) BS01 STL ? GO:0000976 ... Q9AIU0 34548494
    77 7kd8:A (1.71) BS01 STL ? GO:0000976 ... Q9AIU0 34548494
    78 7kd8:B (1.71) BS01 STL ? GO:0000976 ... Q9AIU0 34548494
    79 7kd8:C (1.71) BS01 STL ? GO:0000976 ... Q9AIU0 34548494
    80 7kd8:D (1.71) BS01 STL ? GO:0000976 ... Q9AIU0 34548494
    81 7q9o:A (1.35) BS01 STL ? GO:0005179 ... P02766 36780206
    82 7q9o:B (1.35) BS01 STL ? GO:0005179 ... P02766 36780206
    83 7vb8:A (1.72) BS01 STL ? GO:0000166 ... A0A1B6PFV1 37308495
    84 7vb8:B (1.72) BS01 STL ? GO:0000166 ... A0A1B6PFV1 37308495
    85 7waq:A (2.56) BS01 STL ? GO:0000166 ... A0A1B6PFV1 37308495
    86 7waq:B (2.56) BS01 STL ? GO:0000166 ... A0A1B6PFV1 37308495
    87 7waq:C (2.56) BS01 STL ? GO:0000166 ... A0A1B6PFV1 37308495
    88 7waq:D (2.56) BS01 STL ? GO:0000166 ... A0A1B6PFV1 37308495
    89 8abt:A (1.39) BS01 STL ? N/A Q2G4I2 36652470
    90 8abt:B (1.39) BS01 STL ? N/A Q2G4I2 36652470
    91 8aka:A (1.77) BS03 STL 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    92 8aka:B (1.77) BS03 STL 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    93 8cno:A (1.75) BS03 STL 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    94 8cno:B (1.75) BS03 STL 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    95 8opv:A (2.8) BS01 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    96 8opv:A (2.8) BS02 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    97 8opv:B (2.8) BS01 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    98 8opv:B (2.8) BS02 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    99 8w42:A (1.45) BS01 STL ? N/A P02766 37910439
    100 8w42:B (1.45) BS01 STL ? N/A P02766 37910439
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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