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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3gwu:A (2.14) BS02 SRE ? GO:0005886 ... O67854 19430461 MOAD: ic50=19.7uM
    PDBbind: -logKd/Ki=4.71, IC50=19.7uM
    2 4mm5:A (3.2) BS03 SRE ? GO:0005886 ... O67854 24121440 PDBbind: -logKd/Ki=7.74, Kd=18nM
    3 4mmb:A (2.25) BS03 SRE ? GO:0005886 ... O67854 24121440
    4 6awo:A (3.534) BS01 SRE ? GO:0016020 ... P31645 29379174 PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    BindingDB: IC50=3nM, Kd=0.290000nM, Ki=0.9nM
    5 6awq:A (4.046) BS01 SRE ? GO:0016020 ... P31645 29379174 BindingDB: IC50=3nM, Kd=0.290000nM, Ki=0.9nM
    6 6f6n:A (2.15) BS01 SRE ? N/A Q05320 29272110 MOAD: Kd=0.95mM
    PDBbind: -logKd/Ki=3.02, Kd=0.95mM
    BindingDB: Kd=950000nM
    7 6f6n:B (2.15) BS01 SRE ? N/A Q05320 29272110 PDBbind: -logKd/Ki=3.02, Kd=0.95mM
    BindingDB: Kd=950000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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