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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1009 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7pil:BB (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    202 7pil:BC (2.5) BS01 SPO ? GO:0016020 ... Q3J1A3 34590677
    203 7pil:BC (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    204 7pil:BD (2.5) BS01 SPO ? GO:0016020 ... Q3J1A3 34590677
    205 7pil:BD (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    206 7pil:BE (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    207 7pil:BE (2.5) BS04 SPO ? GO:0016020 ... Q3J1A3 34590677
    208 7pil:BF (2.5) BS01 SPO ? GO:0016020 ... Q3J1A3 34590677
    209 7pil:BF (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    210 7pil:BG (2.5) BS01 SPO ? GO:0016020 ... Q3J1A3 34590677
    211 7pil:BG (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    212 7pil:BH (2.5) BS01 SPO ? GO:0016020 ... Q3J1A3 34590677
    213 7pil:BH (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    214 7pil:BI (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    215 7pil:BJ (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    216 7pil:BJ (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    217 7pil:BK (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    218 7pil:BK (2.5) BS04 SPO ? GO:0016020 ... Q3J1A3 34590677
    219 7pil:BL (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    220 7pil:BL (2.5) BS03 SPO ? GO:0016020 ... Q3J1A3 34590677
    221 7pil:BM (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    222 7pil:BM (2.5) BS04 SPO ? GO:0016020 ... Q3J1A3 34590677
    223 7pil:M (2.5) BS07 SPO ? GO:0009772 ... Q3J1A6 34590677
    224 7pil:X (2.5) BS01 SPO ? N/A P13402 34590677
    225 7va9:0 (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    226 7va9:0 (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    227 7va9:3 (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    228 7va9:3 (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    229 7va9:7 (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    230 7va9:7 (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    231 7va9:8 (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    232 7va9:9 (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    233 7va9:9 (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    234 7va9:A (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    235 7va9:A (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    236 7va9:B (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    237 7va9:B (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    238 7va9:C (3.08) BS01 SPO ? GO:0005886 ... P13402 35418573
    239 7va9:D (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    240 7va9:D (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    241 7va9:E (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    242 7va9:E (3.08) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    243 7va9:F (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    244 7va9:F (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    245 7va9:G (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    246 7va9:G (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    247 7va9:I (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    248 7va9:I (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    249 7va9:J (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    250 7va9:J (3.08) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    251 7va9:K (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    252 7va9:K (3.08) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    253 7va9:M (3.08) BS08 SPO ? GO:0009772 ... Q3J1A6 35418573
    254 7va9:N (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    255 7va9:N (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    256 7va9:O (3.08) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    257 7va9:P (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    258 7va9:Q (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    259 7va9:R (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    260 7va9:S (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    261 7va9:S (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    262 7va9:T (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    263 7va9:T (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    264 7va9:U (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    265 7va9:V (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    266 7va9:W (3.08) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    267 7va9:a (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    268 7va9:a (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    269 7va9:a (3.08) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    270 7va9:aa (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    271 7va9:ab (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    272 7va9:ab (3.08) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    273 7va9:b (3.08) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    274 7va9:c (3.08) BS01 SPO ? GO:0005886 ... P13402 35418573
    275 7va9:d (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    276 7va9:d (3.08) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    277 7va9:d (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    278 7va9:e (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    279 7va9:e (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    280 7va9:f (3.08) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    281 7va9:f (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    282 7va9:f (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    283 7va9:g (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    284 7va9:g (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    285 7va9:i (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    286 7va9:j (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    287 7va9:j (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    288 7va9:k (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    289 7va9:k (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    290 7va9:m (3.08) BS08 SPO ? GO:0009772 ... Q3J1A6 35418573
    291 7va9:n (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    292 7va9:n (3.08) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    293 7va9:o (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    294 7va9:p (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    295 7va9:p (3.08) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    296 7va9:q (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    297 7va9:q (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    298 7va9:r (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    299 7va9:r (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    300 7va9:s (3.08) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    301 7va9:s (3.08) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    302 7va9:s (3.08) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    303 7va9:t (3.08) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    304 7va9:t (3.08) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    305 7va9:u (3.08) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    306 7va9:v (3.08) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    307 7va9:w (3.08) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    308 7vb9:6 (3.45) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    309 7vb9:7 (3.45) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    310 7vb9:9 (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    311 7vb9:9 (3.45) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    312 7vb9:9 (3.45) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    313 7vb9:A (3.45) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    314 7vb9:A (3.45) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    315 7vb9:B (3.45) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    316 7vb9:C (3.45) BS02 SPO ? GO:0005886 ... P13402 35418573
    317 7vb9:D (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    318 7vb9:E (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    319 7vb9:E (3.45) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    320 7vb9:F (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    321 7vb9:F (3.45) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    322 7vb9:G (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    323 7vb9:G (3.45) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    324 7vb9:I (3.45) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    325 7vb9:J (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    326 7vb9:M (3.45) BS08 SPO ? GO:0009772 ... Q3J1A6 35418573
    327 7vb9:N (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    328 7vb9:Q (3.45) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    329 7vb9:Q (3.45) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    330 7vb9:a (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    331 7vb9:a (3.45) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    332 7vb9:a (3.45) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    333 7vb9:aa (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    334 7vb9:ab (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    335 7vb9:ab (3.45) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    336 7vb9:b (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    337 7vb9:c (3.45) BS01 SPO ? GO:0005886 ... P13402 35418573
    338 7vb9:d (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    339 7vb9:e (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    340 7vb9:e (3.45) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    341 7vb9:f (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    342 7vb9:f (3.45) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    343 7vb9:g (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    344 7vb9:g (3.45) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    345 7vb9:i (3.45) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    346 7vb9:i (3.45) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    347 7vb9:j (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    348 7vb9:k (3.45) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    349 7vb9:k (3.45) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    350 7vb9:m (3.45) BS08 SPO ? GO:0009772 ... Q3J1A6 35418573
    351 7vb9:n (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    352 7vb9:n (3.45) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    353 7vb9:o (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    354 7vb9:p (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    355 7vb9:q (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    356 7vb9:q (3.45) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    357 7vb9:r (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    358 7vb9:r (3.45) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    359 7vb9:s (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    360 7vb9:s (3.45) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    361 7vb9:t (3.45) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    362 7vb9:t (3.45) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    363 7vb9:u (3.45) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    364 7vb9:v (3.45) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    365 7vb9:v (3.45) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    366 7vnm:0 (2.86) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    367 7vnm:0 (2.86) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    368 7vnm:0 (2.86) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    369 7vnm:7 (2.86) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    370 7vnm:8 (2.86) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    371 7vnm:9 (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    372 7vnm:9 (2.86) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    373 7vnm:9 (2.86) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    374 7vnm:A (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    375 7vnm:A (2.86) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    376 7vnm:B (2.86) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    377 7vnm:B (2.86) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    378 7vnm:D (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    379 7vnm:D (2.86) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    380 7vnm:D (2.86) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    381 7vnm:D (2.86) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    382 7vnm:E (2.86) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    383 7vnm:E (2.86) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    384 7vnm:E (2.86) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    385 7vnm:F (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    386 7vnm:F (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    387 7vnm:F (2.86) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    388 7vnm:G (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    389 7vnm:G (2.86) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    390 7vnm:I (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    391 7vnm:I (2.86) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    392 7vnm:J (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    393 7vnm:J (2.86) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    394 7vnm:K (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    395 7vnm:M (2.86) BS08 SPO ? GO:0009772 ... Q3J1A6 35418573
    396 7vnm:N (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    397 7vnm:N (2.86) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    398 7vnm:O (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    399 7vnm:O (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    400 7vnm:O (2.86) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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