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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1pot:A (1.8) BS01 SPD ? GO:0015846 ... P0AFK9 8897598 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    2 1poy:1 (2.5) BS01 SPD ? GO:0015846 ... P0AFK9 8621624 MOAD: Kd=3.2uM
    3 1poy:2 (2.5) BS01 SPD ? GO:0015846 ... P0AFK9 8621624 MOAD: Kd=3.2uM
    4 1poy:3 (2.5) BS01 SPD ? GO:0015846 ... P0AFK9 8621624 MOAD: Kd=3.2uM
    5 1poy:4 (2.5) BS01 SPD ? GO:0015846 ... P0AFK9 8621624 MOAD: Kd=3.2uM
    6 1typ:A (2.8) BS04 SPD 1.8.1.12 GO:0004362 ... P39040 8477734
    7 1typ:B (2.8) BS06 SPD 1.8.1.12 GO:0004362 ... P39040 8477734
    8 2o07:A (1.89) BS01 SPD 2.5.1.16 GO:0003824 ... P19623 17585781
    9 2o07:B (1.89) BS01 SPD 2.5.1.16 GO:0003824 ... P19623 17585781
    10 2p18:A (1.8) BS03 SPD 3.1.2.6 GO:0004416 ... Q2PYN0 18052346
    11 2p1e:A (1.9) BS03 SPD 3.1.2.6 GO:0004416 ... Q2PYN0 18052346
    12 3c6k:A (1.95) BS01 SPD 2.5.1.22 GO:0005829 ... P52788 18367445
    13 3c6k:B (1.95) BS01 SPD 2.5.1.22 GO:0005829 ... P52788 18367445
    14 3c6k:C (1.95) BS01 SPD 2.5.1.22 GO:0005829 ... P52788 18367445
    15 3c6k:D (1.95) BS01 SPD 2.5.1.22 GO:0005829 ... P52788 18367445
    16 3ttn:A (2.0) BS01 SPD ? GO:0005615 ... Q9I6J0 22300763 MOAD: Kd=14.3nM
    PDBbind: -logKd/Ki=7.84, Kd=14.3nM
    17 3ttn:B (2.0) BS01 SPD ? GO:0005615 ... Q9I6J0 22300763 MOAD: Kd=14.3nM
    18 3wr7:A (2.5) BS01 SPD ? GO:0004145 ... A0A0M3KKU5 27163532
    19 3wr7:B (2.5) BS01 SPD ? GO:0004145 ... A0A0M3KKU5 27163532
    20 3wr7:C (2.5) BS01 SPD ? GO:0004145 ... A0A0M3KKU5 27163532
    21 3wr7:D (2.5) BS01 SPD ? GO:0004145 ... A0A0M3KKU5 27163532
    22 4c0z:A (2.0) BS01 SPD ? N/A S5FV19 24220033
    23 4c0z:B (2.0) BS01 SPD ? N/A S5FV19 24220033
    24 4c0z:C (2.0) BS01 SPD ? N/A S5FV19 24220033
    25 4c0z:D (2.0) BS01 SPD ? N/A S5FV19 24220033
    26 4c0z:E (2.0) BS01 SPD ? N/A S5FV19 24220033
    27 4c0z:F (2.0) BS01 SPD ? N/A S5FV19 24220033
    28 4c0z:G (2.0) BS01 SPD ? N/A S5FV19 24220033
    29 4c0z:H (2.0) BS01 SPD ? N/A S5FV19 24220033
    30 4c0z:I (2.0) BS01 SPD ? N/A S5FV19 24220033
    31 4c0z:J (2.0) BS01 SPD ? N/A S5FV19 24220033
    32 4c0z:K (2.0) BS01 SPD ? N/A S5FV19 24220033
    33 4c0z:L (2.0) BS01 SPD ? N/A S5FV19 24220033
    34 4cxm:A (1.75) BS02 SPD 2.5.1.16 GO:0003824 ... Q8II73 25760598
    35 4cxm:B (1.75) BS02 SPD 2.5.1.16 GO:0003824 ... Q8II73 25760598
    36 4cxm:C (1.75) BS02 SPD 2.5.1.16 GO:0003824 ... Q8II73 25760598
    37 4mhd:A (2.32) BS01 SPD 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    38 4mhd:B (2.32) BS01 SPD 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    39 4mhd:C (2.32) BS01 SPD 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    40 4mhd:C (2.32) BS02 SPD 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    41 4qf8:A (1.65) BS01 SPD 3.1.1.4 GO:0004623 ... P59071 25541253 PDBbind: -logKd/Ki=7.51, Kd=31nM
    42 5xnh:A (1.95) BS02 SPD 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    43 5xnh:H (1.95) BS02 SPD 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    44 6bq7:A (1.95) BS01 SPD 2.5.1.16 GO:0003824 ... G7K2D1 29367265
    45 6bq7:B (1.95) BS01 SPD 2.5.1.16 GO:0003824 ... G7K2D1 29367265
    46 6lpv:A (2.297) BS02 SPD 2.3.1.- GO:0009555 ... O64470 33519864
    47 6lpw:B (2.401) BS01 SPD 2.3.1.248 GO:0006596 ... O80467 33519864
    48 6qmm:B (2.18) BS01 SPD 2.5.1.16 GO:0003824 ... Q31QK9 30877192
    49 6xxj:A (1.41) BS01 SPD 2.5.1.46 GO:0005515 ... P49366 32235505
    50 6xxj:A (1.41) BS03 SPD 2.5.1.46 GO:0005515 ... P49366 32235505
    51 6xxj:B (1.41) BS01 SPD 2.5.1.46 GO:0005515 ... P49366 32235505
    52 6xxj:B (1.41) BS03 SPD 2.5.1.46 GO:0005515 ... P49366 32235505
    53 6xxk:A (1.65) BS01 SPD 2.5.1.46 GO:0005515 ... P49366 32235505 MOAD: Kd=4uM
    54 6xxk:A (1.65) BS02 SPD 2.5.1.46 GO:0005515 ... P49366 32235505 MOAD: Kd=4uM
    55 6xxk:B (1.65) BS01 SPD 2.5.1.46 GO:0005515 ... P49366 32235505 MOAD: Kd=4uM
    56 6xxk:B (1.65) BS02 SPD 2.5.1.46 GO:0005515 ... P49366 32235505 MOAD: Kd=4uM
    57 6ye8:A (1.5) BS01 SPD ? GO:0015846 ... P31133 33406388
    58 6ye8:B (1.5) BS01 SPD ? GO:0015846 ... P31133 33406388
    59 6yq4:B (2.399) BS01 SPD ? GO:0046872 ... Q8RFS1 33336898
    60 7oys:A (1.57) BS01 SPD ? GO:0015846 ... P31133 34801550
    61 7oyt:A (1.6) BS01 SPD ? GO:0015846 ... P31133 34801550
    62 7oyu:A (1.95) BS01 SPD ? GO:0015846 ... P31133 34801550
    63 7oyv:A (1.9) BS03 SPD ? GO:0015846 ... P31133 34801550
    64 7oyv:B (1.9) BS03 SPD ? GO:0015846 ... P31133 34801550
    65 7oyw:A (1.28) BS01 SPD ? GO:0015846 ... P31133 34801550
    66 7oyw:B (1.28) BS01 SPD ? GO:0015846 ... P31133 34801550
    67 7oyx:A (1.37) BS01 SPD ? GO:0015846 ... P31133 34801550
    68 7oyx:B (1.37) BS01 SPD ? GO:0015846 ... P31133 34801550
    69 7oyy:A (1.36) BS01 SPD ? GO:0015846 ... P31133 34801550
    70 7oyz:A (1.49) BS01 SPD ? GO:0015846 ... P31133 34801550
    71 8iw4:R (3.49) BS01 SPD ? GO:0001594 ... Q5QD04 37225986
    72 8iwe:R (3.4) BS01 SPD ? GO:0001594 ... Q5QD04 37225986
    73 8ss2:A (3.58) BS04 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    74 8ss3:A (3.21) BS07 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    75 8ss4:A (3.3) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    76 8ss6:B (3.01) BS05 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    77 8ssa:A (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    78 8ssa:C (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    79 8ssb:A (3.66) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    80 8ssb:C (3.66) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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