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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fl3:A (2.45) BS01 SPB ? N/A P01867 11030644 MOAD: Kd=0.16uM
    2 1fl3:B (2.45) BS01 SPB ? GO:0005576 ... P01837 11030644
    3 1fl3:H (2.45) BS01 SPB ? N/A P01867 11030644 PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    4 1fl3:L (2.45) BS01 SPB ? GO:0005576 ... P01837 11030644 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    5 1ub5:A (2.0) BS01 SPB ? N/A P01867 N/A
    6 1ub5:B (2.0) BS01 SPB ? GO:0005576 ... P01837 N/A
    7 1ub5:H (2.0) BS01 SPB ? N/A P01867 N/A
    8 1ub5:L (2.0) BS01 SPB ? GO:0005576 ... P01837 N/A
    9 3cfb:A (1.6) BS01 SPB N/A N/A N/A 18309081
    10 3cfb:B (1.6) BS01 SPB N/A N/A N/A 18309081
    11 3cfb:H (1.6) BS01 SPB N/A N/A N/A 18309081
    12 3cfb:L (1.6) BS01 SPB N/A N/A N/A 18309081
    13 3cfd:A (2.5) BS01 SPB N/A N/A N/A 18309081
    14 3cfd:B (2.5) BS01 SPB N/A N/A N/A 18309081
    15 3cfd:H (2.5) BS01 SPB N/A N/A N/A 18309081
    16 3cfd:L (2.5) BS01 SPB N/A N/A N/A 18309081
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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