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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
Download all results in tab-seperated text for 1868 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1hn4:A (1.5) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11560489
    202 1hn4:A (1.5) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11560489
    203 1hn4:B (1.5) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11560489
    204 1hv6:A (2.0) BS04 SO4 4.2.2.3 GO:0016829 ... Q9KWU1 11243798
    205 1hy0:A (2.2) BS01 SO4 4.3.2.1 GO:0003824 ... P24057 11258884
    206 1hy0:B (2.2) BS01 SO4 4.3.2.1 GO:0003824 ... P24057 11258884
    207 1hyb:A (2.0) BS01 SO4 2.7.7.1 GO:0000309 ... O26253 11063748
    208 1i74:A (2.2) BS03 SO4 3.6.1.1 GO:0004427 ... O68579 11525166
    209 1i74:A (2.2) BS04 SO4 3.6.1.1 GO:0004427 ... O68579 11525166
    210 1i74:B (2.2) BS03 SO4 3.6.1.1 GO:0004427 ... O68579 11525166
    211 1i9d:A (1.65) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    212 1ib6:A (2.1) BS01 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    213 1ib6:A (2.1) BS02 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    214 1ib6:C (2.1) BS01 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    215 1ib6:C (2.1) BS02 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    216 1ib6:D (2.1) BS01 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    217 1ib6:D (2.1) BS02 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    218 1ibs:A (2.8) BS01 SO4 2.7.6.1 GO:0000287 ... P14193 11790837
    219 1ijt:A (1.8) BS01 SO4 ? GO:0008083 ... P08620 11486033
    220 1iq7:A (2.3) BS01 SO4 ? GO:0005576 ... P02789 11466309
    221 1iwa:A (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    222 1iwa:C (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    223 1iwa:E (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    224 1iwa:I (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    225 1iwa:K (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    226 1iwa:M (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    227 1iwa:O (2.6) BS01 SO4 4.1.1.39 GO:0000287 ... O98949 12220629
    228 1iys:A (1.65) BS01 SO4 3.5.2.6 GO:0008800 ... Q47066 12962487
    229 1iys:A (1.65) BS02 SO4 3.5.2.6 GO:0008800 ... Q47066 12962487
    230 1iys:A (1.65) BS03 SO4 3.5.2.6 GO:0008800 ... Q47066 12962487
    231 1iys:A (1.65) BS04 SO4 3.5.2.6 GO:0008800 ... Q47066 12962487
    232 1j9b:A (1.26) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    233 1jdt:A (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    234 1jdt:B (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    235 1jdt:C (2.0) BS02 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    236 1jdv:A (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    237 1jdv:B (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    238 1jdv:C (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    239 1jdv:D (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    240 1jdv:E (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    241 1jdv:F (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    242 1jdz:A (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    243 1jdz:B (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    244 1jdz:C (2.0) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    245 1je1:A (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    246 1je1:B (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    247 1je1:C (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    248 1je1:D (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    249 1je1:E (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    250 1je1:F (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    251 1jec:A (2.5) BS02 SO4 2.7.7.4 GO:0000096 ... P08536 11700067
    252 1jfd:A (2.2) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9237692
    253 1jfd:B (2.2) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9237692
    254 1jhd:A (1.7) BS01 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    255 1jhd:A (1.7) BS02 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    256 1jhd:A (1.7) BS03 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    257 1jjc:B (2.6) BS01 SO4 6.1.1.20 GO:0000049 ... Q5SGX1 11679717
    258 1jl3:A (1.6) BS01 SO4 1.20.4.4 GO:0004725 ... P45947 11698660
    259 1jl3:B (1.6) BS01 SO4 1.20.4.4 GO:0004725 ... P45947 11698660
    260 1jl3:C (1.6) BS01 SO4 1.20.4.4 GO:0004725 ... P45947 11698660
    261 1jl3:D (1.6) BS01 SO4 1.20.4.4 GO:0004725 ... P45947 11698660
    262 1jma:A (2.65) BS01 SO4 ? GO:0016020 ... P57083 11511370
    263 1jp7:A (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    264 1jp7:B (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    265 1jp7:C (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    266 1jpv:A (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    267 1jpv:B (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    268 1jpv:C (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    269 1jqo:A (3.0) BS01 SO4 4.1.1.31 GO:0003824 ... P04711 12467579
    270 1jqo:B (3.0) BS01 SO4 4.1.1.31 GO:0003824 ... P04711 12467579
    271 1juk:A (2.5) BS01 SO4 4.1.1.48 GO:0000162 ... Q06121 8893859
    272 1jvs:A (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    273 1jvs:B (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    274 1jzw:A (1.76) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    275 1k49:A (1.5) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    276 1k49:A (1.5) BS02 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    277 1k49:A (1.5) BS03 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    278 1k4i:A (0.98) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    279 1k4i:A (0.98) BS02 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    280 1k4l:A (1.6) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    281 1k4l:A (1.6) BS02 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    282 1k4o:A (1.1) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    283 1k4p:A (1.0) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    284 1kf2:A (1.1) BS01 SO4 4.6.1.18 GO:0003676 ... P61823 11856829
    285 1kf3:A (1.05) BS01 SO4 4.6.1.18 GO:0003676 ... P61823 11856829
    286 1kf4:A (1.1) BS01 SO4 4.6.1.18 GO:0003676 ... P61823 11856829
    287 1kfi:A (2.4) BS02 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    288 1kfi:A (2.4) BS03 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    289 1kfi:B (2.4) BS02 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    290 1kfi:B (2.4) BS03 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    291 1kgg:A (2.3) BS01 SO4 3.5.2.6 GO:0008800 ... P00807 10436083
    292 1knt:A (1.6) BS01 SO4 ? GO:0004867 ... P12111 7533217
    293 1kvd:A (1.8) BS01 SO4 ? GO:0005576 ... P19972 9016714
    294 1kvd:B (1.8) BS01 SO4 ? GO:0005576 ... P19972 9016714
    295 1kvd:B (1.8) BS02 SO4 ? GO:0005576 ... P19972 9016714
    296 1kvd:C (1.8) BS01 SO4 ? GO:0005576 ... P19972 9016714
    297 1kzh:A (2.55) BS01 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    298 1kzh:A (2.55) BS02 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    299 1kzh:A (2.55) BS03 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    300 1kzh:B (2.55) BS01 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    301 1kzh:B (2.55) BS02 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    302 1kzh:B (2.55) BS03 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    303 1kzh:B (2.55) BS04 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    304 1kzh:B (2.55) BS05 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    305 1l1q:A (1.85) BS01 SO4 2.4.2.7 GO:0003999 ... Q967M2 12171925
    306 1l1q:A (1.85) BS02 SO4 2.4.2.7 GO:0003999 ... Q967M2 12171925
    307 1l1q:A (1.85) BS03 SO4 2.4.2.7 GO:0003999 ... Q967M2 12171925
    308 1l9l:A (0.92) BS01 SO4 ? GO:0042742 ... P22749 12488100
    309 1l9l:A (0.92) BS02 SO4 ? GO:0042742 ... P22749 12488100
    310 1l9l:A (0.92) BS03 SO4 ? GO:0042742 ... P22749 12488100
    311 1ldb:A (2.8) BS01 SO4 1.1.1.27 GO:0003824 ... P00344 2330370
    312 1lec:A (2.0) BS03 SO4 ? GO:0030246 ... P24146 8478943
    313 1led:A (2.0) BS07 SO4 ? GO:0030246 ... P24146 8478943
    314 1lkb:A (1.7) BS01 SO4 3.4.21.36 GO:0004252 ... P00772 12198296
    315 1lr7:A (1.5) BS01 SO4 ? N/A P21674 12867435
    316 1lr7:A (1.5) BS02 SO4 ? N/A P21674 12867435
    317 1lv7:A (1.5) BS01 SO4 3.4.24.- GO:0005524 ... P0AAI3 12176385
    318 1m7g:A (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    319 1m7g:A (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    320 1m7g:A (1.43) BS03 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    321 1m7g:B (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    322 1m7g:C (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    323 1m7g:C (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    324 1m7h:A (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    325 1m7h:C (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    326 1mcp:H (2.7) BS01 SO4 ? GO:0002250 ... P01789 3097327
    327 1mdc:A (1.75) BS01 SO4 ? GO:0005504 ... P31417 1447782
    328 1mez:A (2.4) BS02 SO4 6.3.4.4 GO:0000166 ... P28650 12186864
    329 1mjw:A (1.95) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    330 1mjw:B (1.95) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    331 1mjx:A (2.15) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    332 1mjx:B (2.15) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    333 1mkj:A (2.7) BS01 SO4 ? GO:0003777 ... P33176 12368902
    334 1mqf:A (2.5) BS01 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    335 1mqf:A (2.5) BS02 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    336 1mxs:A (2.2) BS01 SO4 4.1.2.14 GO:0008675 ... P00885 12876349
    337 1myg:A (1.75) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    338 1myg:B (1.75) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    339 1myh:A (1.9) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    340 1myh:B (1.9) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    341 1n1d:A (2.0) BS01 SO4 2.7.7.39 GO:0003824 ... P27623 14506262
    342 1n1d:B (2.0) BS01 SO4 2.7.7.39 GO:0003824 ... P27623 14506262
    343 1n1d:D (2.0) BS01 SO4 2.7.7.39 GO:0003824 ... P27623 14506262
    344 1nba:A (2.0) BS01 SO4 3.5.1.59 GO:0006602 ... P32400 1381445
    345 1nba:B (2.0) BS01 SO4 3.5.1.59 GO:0006602 ... P32400 1381445
    346 1nba:C (2.0) BS01 SO4 3.5.1.59 GO:0006602 ... P32400 1381445
    347 1nba:D (2.0) BS01 SO4 3.5.1.59 GO:0006602 ... P32400 1381445
    348 1nc6:A (1.9) BS02 SO4 3.4.21.4 GO:0004175 ... P00760 12930148
    349 1nf2:A (2.2) BS01 SO4 ? GO:0000287 ... Q9WZB9 12824492
    350 1nf2:B (2.2) BS01 SO4 ? GO:0000287 ... Q9WZB9 12824492
    351 1nf2:C (2.2) BS01 SO4 ? GO:0000287 ... Q9WZB9 12824492
    352 1nf2:C (2.2) BS02 SO4 ? GO:0000287 ... Q9WZB9 12824492
    353 1nit:A (2.05) BS01 SO4 4.2.1.3 GO:0003994 ... P20004 8151704
    354 1nlf:B (1.95) BS01 SO4 ? GO:0005524 ... P20356 12777796
    355 1nm0:A (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    356 1nm0:A (2.3) BS02 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    357 1nmw:A (-1.00) BS01 SO4 5.2.1.8 GO:0003755 ... Q13526 12721297
    358 1np6:B (1.9) BS01 SO4 ? GO:0005515 ... P32125 12682065
    359 1o7k:A (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    360 1o7k:B (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    361 1o7k:C (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    362 1o7k:C (2.0) BS02 SO4 ? GO:0005737 ... P14598 12356722
    363 1obf:O (1.7) BS01 SO4 1.2.1.- GO:0000166 ... P83696 12777799
    364 1obf:O (1.7) BS02 SO4 1.2.1.- GO:0000166 ... P83696 12777799
    365 1obf:P (1.7) BS01 SO4 1.2.1.- GO:0000166 ... P83696 12777799
    366 1odi:A (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    367 1odi:B (2.4) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    368 1odi:C (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    369 1odi:C (2.4) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    370 1odi:D (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    371 1odi:E (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    372 1odi:F (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    373 1odi:F (2.4) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    374 1odj:A (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    375 1odj:B (2.4) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    376 1odj:C (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    377 1odj:D (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    378 1odj:E (2.4) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    379 1odj:F (2.4) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    380 1odl:A (2.1) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    381 1odl:A (2.1) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    382 1odl:B (2.1) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    383 1odl:B (2.1) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    384 1odl:C (2.1) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    385 1odl:C (2.1) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    386 1odl:D (2.1) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    387 1odl:E (2.1) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    388 1odl:F (2.1) BS01 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    389 1odl:F (2.1) BS02 SO4 2.4.2.3 GO:0003824 ... Q5SID9 15046984
    390 1ojn:A (1.6) BS03 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    391 1ojo:A (1.75) BS03 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    392 1ojp:A (1.9) BS03 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    393 1ojp:A (1.9) BS04 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    394 1onc:A (1.7) BS01 SO4 3.1.27.- GO:0003676 ... P22069 8120892
    395 1oro:A (2.4) BS01 SO4 2.4.2.10 GO:0000287 ... P0A7E3 8620002
    396 1ov4:A (2.7) BS01 SO4 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 14573603
    397 1p7k:A (1.75) BS01 SO4 ? N/A I6L978 15340914
    398 1p7k:B (1.75) BS01 SO4 ? N/A P01868 15340914
    399 1p7k:H (1.75) BS01 SO4 ? N/A P01868 15340914
    400 1p7k:H (1.75) BS02 SO4 ? N/A P01868 15340914

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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