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BioLiP
Download all results in tab-seperated text for 1868 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a34:A (1.81) BS03 SO4 ? GO:0005198 ... P17574 9514737
    2 1abb:A (2.8) BS01 SO4 2.4.1.1 GO:0000166 ... P00489 1304390
    3 1abb:B (2.8) BS02 SO4 2.4.1.1 GO:0000166 ... P00489 1304390
    4 1abb:C (2.8) BS01 SO4 2.4.1.1 GO:0000166 ... P00489 1304390
    5 1abb:D (2.8) BS02 SO4 2.4.1.1 GO:0000166 ... P00489 1304390
    6 1amj:A (2.0) BS01 SO4 4.2.1.3 GO:0003994 ... P20004 7675781
    7 1b6g:A (1.15) BS01 SO4 3.8.1.5 GO:0003824 ... P22643 10393294
    8 1b6r:A (2.1) BS01 SO4 6.3.4.18 GO:0004638 ... P09029 10569930
    9 1b7b:A (2.8) BS01 SO4 2.7.2.2 GO:0005524 ... P0A2X8 10211841
    10 1b7b:B (2.8) BS01 SO4 2.7.2.2 GO:0005524 ... P0A2X8 10211841
    11 1b7b:C (2.8) BS01 SO4 2.7.2.2 GO:0005524 ... P0A2X8 10211841
    12 1b7b:D (2.8) BS01 SO4 2.7.2.2 GO:0005524 ... P0A2X8 10211841
    13 1bdj:A (2.68) BS01 SO4 ? GO:0000156 ... P0AE67 10393292
    14 1bel:A (1.6) BS01 SO4 4.6.1.18 GO:0003676 ... P61823 15299907
    15 1bht:A (2.0) BS01 SO4 ? N/A P14210 9817840
    16 1bht:A (2.0) BS02 SO4 ? N/A P14210 9817840
    17 1bht:B (2.0) BS01 SO4 ? N/A P14210 9817840
    18 1bit:A (1.83) BS02 SO4 3.4.21.4 GO:0004252 ... P35031 15299802
    19 1bju:A (1.8) BS02 SO4 3.4.21.4 GO:0004175 ... P00760 9836602
    20 1bjv:A (1.8) BS02 SO4 3.4.21.4 GO:0004175 ... P00760 9836602
    21 1bjv:A (1.8) BS03 SO4 3.4.21.4 GO:0004175 ... P00760 9836602
    22 1bk4:A (2.3) BS02 SO4 3.1.3.11 GO:0005737 ... P00637 10089399
    23 1bk4:A (2.3) BS03 SO4 3.1.3.11 GO:0005737 ... P00637 10089399
    24 1bsr:A (1.9) BS01 SO4 4.6.1.18 GO:0003676 ... P00669 15299514
    25 1bsr:B (1.9) BS01 SO4 4.6.1.18 GO:0003676 ... P00669 15299514
    26 1btc:A (2.0) BS03 SO4 3.2.1.2 GO:0000272 ... P10538 8334116
    27 1bz5:A (2.58) BS01 SO4 ? GO:0004867 ... P00974 10731422
    28 1cai:A (1.8) BS02 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    29 1caj:A (1.9) BS02 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    30 1cak:A (1.9) BS03 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    31 1cbk:A (2.02) BS01 SO4 2.7.6.3 GO:0003848 ... P43777 10080886
    32 1cbk:B (2.02) BS01 SO4 2.7.6.3 GO:0003848 ... P43777 10080886
    33 1cg6:A (1.7) BS01 SO4 2.4.2.28 GO:0003824 ... Q13126 10404592
    34 1cli:A (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    35 1cli:B (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    36 1cli:C (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    37 1cli:D (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    38 1cvb:A (2.4) BS02 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8262987
    39 1cw1:A (2.1) BS01 SO4 1.1.1.42 GO:0000287 ... P08200 10623532
    40 1cw4:A (2.1) BS02 SO4 1.1.1.42 GO:0000287 ... P08200 10623532
    41 1cw7:A (2.6) BS01 SO4 1.1.1.42 GO:0000287 ... P08200 10623532
    42 1cwr:A (2.1) BS01 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    43 1cwt:A (2.3) BS01 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    44 1cwt:A (2.3) BS02 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    45 1czj:A (2.16) BS01 SO4 ? GO:0009055 ... P38554 8740362
    46 1d2t:A (1.9) BS01 SO4 3.1.3.2 GO:0003993 ... Q9S1A6 10835340
    47 1d8h:A (2.0) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    48 1d8h:B (2.0) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    49 1d8h:C (2.0) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    50 1d8i:A (2.05) BS01 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    51 1d8i:A (2.05) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    52 1d8i:B (2.05) BS01 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    53 1d8i:B (2.05) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    54 1d8i:C (2.05) BS01 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    55 1d8i:C (2.05) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    56 1dbf:A (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    57 1dbf:A (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    58 1dbf:A (1.3) BS06 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    59 1dbf:B (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    60 1dbf:B (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    61 1dbf:B (1.3) BS03 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    62 1dbf:C (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    63 1dbf:C (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    64 1dd1:A (2.62) BS01 SO4 ? GO:0006355 ... Q13485 10647180
    65 1dd1:B (2.62) BS01 SO4 ? GO:0006355 ... Q13485 10647180
    66 1dd1:B (2.62) BS02 SO4 ? GO:0006355 ... Q13485 10647180
    67 1dd1:B (2.62) BS03 SO4 ? GO:0006355 ... Q13485 10647180
    68 1dd1:C (2.62) BS01 SO4 ? GO:0006355 ... Q13485 10647180
    69 1dd1:C (2.62) BS02 SO4 ? GO:0006355 ... Q13485 10647180
    70 1dd1:C (2.62) BS03 SO4 ? GO:0006355 ... Q13485 10647180
    71 1dd1:C (2.62) BS04 SO4 ? GO:0006355 ... Q13485 10647180
    72 1dfv:A (2.6) BS01 SO4 ? GO:0005506 ... P80188 10684642
    73 1dfv:B (2.6) BS01 SO4 ? GO:0005506 ... P80188 10684642
    74 1djs:A (2.4) BS01 SO4 2.7.10.1 N/A P21802 10618369
    75 1djs:A (2.4) BS02 SO4 2.7.10.1 N/A P21802 10618369
    76 1djs:B (2.4) BS01 SO4 ? GO:0008083 ... P05230 10618369
    77 1djs:B (2.4) BS02 SO4 ? GO:0008083 ... P05230 10618369
    78 1djs:B (2.4) BS03 SO4 ? GO:0008083 ... P05230 10618369
    79 1djs:B (2.4) BS04 SO4 ? GO:0008083 ... P05230 10618369
    80 1dpo:A (1.59) BS02 SO4 3.4.21.4 GO:0004252 ... P00763 1881877
    81 1dpo:A (1.59) BS03 SO4 3.4.21.4 GO:0004252 ... P00763 1881877
    82 1dqg:A (1.7) BS01 SO4 ? N/A Q61830 10748229
    83 1e4m:M (1.2) BS02 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    84 1e4m:M (1.2) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    85 1e4m:M (1.2) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    86 1e6q:M (1.35) BS02 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    87 1e6q:M (1.35) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    88 1e6s:M (1.35) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    89 1e6s:M (1.35) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    90 1e6s:M (1.35) BS05 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    91 1e6x:M (1.6) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    92 1e6x:M (1.6) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    93 1e70:M (1.65) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    94 1e70:M (1.65) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    95 1e70:M (1.65) BS05 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    96 1e71:M (1.5) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    97 1e71:M (1.5) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    98 1e71:M (1.5) BS05 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    99 1e71:M (1.5) BS06 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    100 1e72:M (1.6) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    101 1e72:M (1.6) BS05 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    102 1e73:M (1.5) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    103 1e73:M (1.5) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 10978344
    104 1eep:A (2.4) BS01 SO4 1.1.1.205 GO:0003824 ... P49058 10758003
    105 1egu:A (1.56) BS01 SO4 4.2.2.1 GO:0003824 ... Q54873 10716923
    106 1ej2:A (1.9) BS01 SO4 2.7.7.1 GO:0000309 ... O26253 11063748
    107 1eo9:B (2.0) BS02 SO4 1.13.11.3 GO:0003824 ... P20372 10891075
    108 1eow:A (2.0) BS01 SO4 4.6.1.18 GO:0003676 ... P61823 10892814
    109 1esu:A (2.0) BS01 SO4 3.5.2.6 GO:0005515 ... P62593 15299797
    110 1exd:A (2.7) BS02 SO4 6.1.1.18 GO:0000166 ... P00962 10881199
    111 1f3h:A (2.58) BS02 SO4 ? GO:0000228 ... O15392 10876248
    112 1f3h:A (2.58) BS03 SO4 ? GO:0000228 ... O15392 10876248
    113 1f5j:B (1.8) BS01 SO4 3.2.1.8 GO:0004553 ... P77853 11053833
    114 1fcj:A (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    115 1fcj:B (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    116 1fcj:C (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    117 1fcj:D (2.0) BS01 SO4 2.5.1.47 GO:0004124 ... P0A1E3 11023792
    118 1fcs:A (1.6) BS01 SO4 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8462669
    119 1fs8:A (1.6) BS02 SO4 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    120 1fs8:A (1.6) BS03 SO4 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    121 1fsi:A (2.5) BS01 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    122 1fsi:A (2.5) BS02 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    123 1fsi:A (2.5) BS03 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    124 1fsi:B (2.5) BS01 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    125 1fsi:B (2.5) BS02 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    126 1fsi:B (2.5) BS03 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    127 1fsi:C (2.5) BS01 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    128 1fsi:C (2.5) BS02 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    129 1fsi:C (2.5) BS03 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    130 1fsi:C (2.5) BS04 SO4 3.1.4.37 GO:0004112 ... O04147 11080166
    131 1fw1:A (1.9) BS01 SO4 2.5.1.18
    5.2.1.2    		 GO:0003824 ... O43708 11327815
    132 1fwm:A (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    133 1fwm:B (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    134 1fwz:A (2.3) BS01 SO4 ? GO:0003677 ... P0DJL7 11320302
    135 1fx9:A (2.0) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    136 1fx9:B (2.0) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    137 1fx9:B (2.0) BS04 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    138 1fxr:B (2.3) BS01 SO4 ? GO:0005506 ... P00210 7803404
    139 1g0d:A (2.5) BS01 SO4 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44    		 GO:0000785 ... P52181 11080504
    140 1g2p:A (1.75) BS01 SO4 2.4.2.7 GO:0002055 ... P49435 11535055
    141 1g2r:A (1.35) BS01 SO4 ? N/A A0A0H2UNW2 11679764
    142 1g3w:A (2.4) BS01 SO4 ? GO:0003677 ... P0DJL7 11320302
    143 1g5b:A (2.15) BS03 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    144 1g5b:B (2.15) BS03 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    145 1g5b:B (2.15) BS04 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    146 1g5b:C (2.15) BS03 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    147 1g66:A (0.9) BS01 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    148 1g66:A (0.9) BS02 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    149 1g66:A (0.9) BS03 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    150 1g8f:A (1.95) BS02 SO4 2.7.7.4 GO:0000096 ... P08536 11157739
    151 1g8f:A (1.95) BS03 SO4 2.7.7.4 GO:0000096 ... P08536 11157739
    152 1g8t:A (1.1) BS01 SO4 3.1.30.2 GO:0003676 ... P13717 10771425
    153 1g8t:B (1.1) BS01 SO4 3.1.30.2 GO:0003676 ... P13717 10771425
    154 1gky:A (2.0) BS01 SO4 2.7.4.8 GO:0004385 ... P15454 1314905
    155 1gm4:A (2.05) BS05 SO4 ? GO:0009055 ... Q9L915 11551953
    156 1gmb:A (2.0) BS05 SO4 ? GO:0009055 ... Q9L915 11551953
    157 1gmo:A (3.0) BS01 SO4 ? N/A P14210 11597998
    158 1gmo:B (3.0) BS06 SO4 ? N/A P14210 11597998
    159 1gmo:C (3.0) BS03 SO4 ? N/A P14210 11597998
    160 1gmo:D (3.0) BS01 SO4 ? N/A P14210 11597998
    161 1gmo:E (3.0) BS01 SO4 ? N/A P14210 11597998
    162 1gmo:F (3.0) BS04 SO4 ? N/A P14210 11597998
    163 1gmo:F (3.0) BS05 SO4 ? N/A P14210 11597998
    164 1gmo:H (3.0) BS03 SO4 ? N/A P14210 11597998
    165 1gng:A (2.6) BS02 SO4 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 11738041
    166 1gng:B (2.6) BS03 SO4 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 11738041
    167 1gnx:A (1.68) BS03 SO4 3.2.1.21 GO:0004553 ... Q59976 N/A
    168 1gnx:B (1.68) BS01 SO4 3.2.1.21 GO:0004553 ... Q59976 N/A
    169 1gon:A (2.2) BS01 SO4 3.2.1.21 GO:0004553 ... Q59976 N/A
    170 1gov:A (2.0) BS01 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    171 1gov:A (2.0) BS02 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    172 1gov:B (2.0) BS01 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    173 1gov:B (2.0) BS02 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    174 1goy:A (2.0) BS02 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    175 1goy:B (2.0) BS01 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    176 1goy:B (2.0) BS02 SO4 3.1.27.- GO:0003723 ... P00649 11976484
    177 1gq1:A (1.4) BS03 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    178 1gq1:A (1.4) BS04 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    179 1gq1:A (1.4) BS05 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    180 1gq1:B (1.4) BS03 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    181 1gq1:B (1.4) BS04 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    182 1gq1:B (1.4) BS05 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    183 1gq1:B (1.4) BS06 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    184 1gq1:B (1.4) BS07 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    185 1gsa:A (2.0) BS03 SO4 6.3.2.3 GO:0000287 ... P04425 8810901
    186 1h1w:A (2.0) BS01 SO4 2.7.11.1 GO:0004672 ... O15530 12169624
    187 1h1w:A (2.0) BS02 SO4 2.7.11.1 GO:0004672 ... O15530 12169624
    188 1h1y:B (1.87) BS01 SO4 5.1.3.1 GO:0004750 ... Q9SE42 12547196
    189 1h1z:A (3.4) BS02 SO4 5.1.3.1 GO:0004750 ... Q9SE42 12547196
    190 1h1z:B (3.4) BS02 SO4 5.1.3.1 GO:0004750 ... Q9SE42 12547196
    191 1h5n:A (2.0) BS03 SO4 1.7.2.3
    1.8.5.3    		 GO:0016491 ... Q52675 11502174
    192 1h5n:C (2.0) BS03 SO4 1.7.2.3
    1.8.5.3    		 GO:0016491 ... Q52675 11502174
    193 1h8e:E (2.0) BS02 SO4 7.1.2.2 GO:0005515 ... P00829 11509182
    194 1h96:A (1.6) BS04 SO4 ? GO:0005506 ... P29391 11679711
    195 1hdh:A (1.3) BS02 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    196 1hdh:A (1.3) BS03 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    197 1hdh:B (1.3) BS02 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    198 1hdh:B (1.3) BS03 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    199 1hi2:A (1.6) BS01 SO4 4.6.1.18 GO:0001530 ... P10153 11154698
    200 1hi2:A (1.6) BS02 SO4 4.6.1.18 GO:0001530 ... P10153 11154698
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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