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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ezv:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 10873857
    2 1kb9:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11726495
    3 1kyo:C (2.97) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11880631
    4 1kyo:E (2.97) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 11880631
    5 1kyo:N (2.97) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11880631
    6 1pp9:C (2.1) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 16024040
    7 1pp9:E (2.1) BS02 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    8 1pp9:P (2.1) BS05 SMA 1.10.2.2 GO:0005739 ... P00157 16024040
    9 1pp9:R (2.1) BS01 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    10 1ppj:C (2.1) BS04 SMA 1.10.2.2 GO:0005739 ... P00157 16024040
    11 1ppj:E (2.1) BS02 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    12 1ppj:P (2.1) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 16024040
    13 1ppj:R (2.1) BS01 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    14 1sqx:C (2.6) BS04 SMA ? GO:0005739 ... P00157 15312779
    15 1zrt:C (3.51) BS03 SMA ? GO:0005886 ... P0CY47 16034531
    16 1zrt:P (3.51) BS03 SMA ? GO:0005886 ... P0CY47 16034531
    17 2a06:C (2.1) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 16024040 MOAD: Kd~30pM
    18 2a06:E (2.1) BS02 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    19 2a06:P (2.1) BS04 SMA 1.10.2.2 GO:0005739 ... P00157 16024040 MOAD: Kd~30pM
    20 2a06:R (2.1) BS01 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    21 2fyn:A (3.2) BS03 SMA ? GO:0005886 ... Q02761 16924113
    22 2fyn:C (3.2) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 16924113
    23 2fyn:D (3.2) BS03 SMA ? GO:0005886 ... Q02761 16924113
    24 2fyn:G (3.2) BS03 SMA ? GO:0005886 ... Q02761 16924113
    25 2fyn:J (3.2) BS03 SMA ? GO:0005886 ... Q02761 16924113
    26 2fyn:M (3.2) BS03 SMA ? GO:0005886 ... Q02761 16924113
    27 2fyn:P (3.2) BS03 SMA ? GO:0005886 ... Q02761 16924113
    28 2ibz:C (2.3) BS04 SMA 7.1.1.8 GO:0005739 ... P00163 17337272
    29 2jbl:L (2.4) BS04 SMA ? GO:0009772 ... P06009 17337272 PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    30 2qjk:A (3.1) BS03 SMA ? GO:0005886 ... Q02761 18039651
    31 2qjk:C (3.1) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    32 2qjk:D (3.1) BS03 SMA ? GO:0005886 ... Q02761 18039651
    33 2qjk:G (3.1) BS03 SMA ? GO:0005886 ... Q02761 18039651
    34 2qjk:J (3.1) BS03 SMA ? GO:0005886 ... Q02761 18039651
    35 2qjk:M (3.1) BS03 SMA ? GO:0005886 ... Q02761 18039651
    36 2qjk:P (3.1) BS03 SMA ? GO:0005886 ... Q02761 18039651
    37 2qjp:A (2.6) BS03 SMA ? GO:0005886 ... Q02761 18039651
    38 2qjp:C (2.6) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    39 2qjp:D (2.6) BS03 SMA ? GO:0005886 ... Q02761 18039651
    40 2qjp:F (2.6) BS01 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    41 2qjp:G (2.6) BS03 SMA ? GO:0005886 ... Q02761 18039651
    42 2qjp:I (2.6) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    43 2qjp:J (2.6) BS03 SMA ? GO:0005886 ... Q02761 18039651
    44 2qjp:L (2.6) BS01 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    45 2qjy:A (2.4) BS03 SMA ? GO:0005886 ... Q02761 18039651 MOAD: Kd~0.7nM
    46 2qjy:C (2.4) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    47 2qjy:D (2.4) BS03 SMA ? GO:0005886 ... Q02761 18039651 MOAD: Kd~0.7nM
    48 2qjy:F (2.4) BS01 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    49 2qjy:G (2.4) BS03 SMA ? GO:0005886 ... Q02761 18039651 MOAD: Kd~0.7nM
    50 2qjy:I (2.4) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    51 2qjy:J (2.4) BS03 SMA ? GO:0005886 ... Q02761 18039651 MOAD: Kd~0.7nM
    52 2qjy:L (2.4) BS01 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    53 2qjy:M (2.4) BS03 SMA ? GO:0005886 ... Q02761 18039651 MOAD: Kd~0.7nM
    54 2qjy:P (2.4) BS03 SMA ? GO:0005886 ... Q02761 18039651 MOAD: Kd~0.7nM
    55 2qjy:R (2.4) BS01 SMA 7.1.1.8 GO:0005886 ... Q02762 18039651
    56 2ybb:C (19.0) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 21909073
    57 2ybb:E (19.0) BS02 SMA 7.1.1.8 GO:0008121 ... P13272 21909073
    58 2ybb:c (19.0) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 21909073
    59 2ybb:e (19.0) BS01 SMA 7.1.1.8 GO:0008121 ... P13272 21909073
    60 2yiu:A (2.7) BS03 SMA 1.10.2.2 GO:0005886 ... P05418 21996020 PDBbind: -logKd/Ki=6.89, IC50=130nM
    61 2yiu:C (2.7) BS02 SMA 7.1.1.8 GO:0005886 ... P05417 21996020
    62 2yiu:D (2.7) BS03 SMA 1.10.2.2 GO:0005886 ... P05418 21996020 PDBbind: -logKd/Ki=6.89, IC50=130nM
    63 2yiu:F (2.7) BS01 SMA 7.1.1.8 GO:0005886 ... P05417 21996020 PDBbind: -logKd/Ki=6.89, IC50=130nM
    64 3cx5:C (1.9) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    65 3cx5:E (1.9) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    66 3cx5:N (1.9) BS04 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    67 3cx5:P (1.9) BS01 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    68 3cxh:C (2.5) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    69 3cxh:E (2.5) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    70 3cxh:N (2.5) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    71 3cxh:P (2.5) BS01 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    72 3h1i:C (3.53) BS03 SMA 1.10.2.2 GO:0005737 ... P18946 9565029
    73 3h1i:E (3.53) BS02 SMA 7.1.1.8 GO:0008121 ... Q5ZLR5 9565029
    74 3h1i:P (3.53) BS03 SMA 1.10.2.2 GO:0005737 ... P18946 9565029
    75 3h1i:R (3.53) BS01 SMA 7.1.1.8 GO:0008121 ... Q5ZLR5 9565029
    76 3h1j:C (3.0) BS03 SMA 1.10.2.2 GO:0005737 ... P18946 9565029
    77 3h1j:E (3.0) BS02 SMA 7.1.1.8 GO:0008121 ... Q5ZLR5 9565029
    78 3h1j:P (3.0) BS03 SMA 1.10.2.2 GO:0005737 ... P18946 9565029
    79 3h1j:R (3.0) BS01 SMA 7.1.1.8 GO:0008121 ... Q5ZLR5 9565029
    80 4pv1:A (3.0) BS05 SMA ? GO:0009055 ... P83791 25296314
    81 4pv1:B (3.0) BS03 SMA ? GO:0009055 ... P83792 25296314
    82 5kli:A (2.996) BS03 SMA ? GO:0005886 ... Q02761 27758861
    83 5kli:C (2.996) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 27758861
    84 5kli:E (2.996) BS03 SMA ? GO:0005886 ... Q02761 27758861
    85 5kli:K (2.996) BS03 SMA ? GO:0005886 ... Q02761 27758861
    86 5kli:M (2.996) BS02 SMA 7.1.1.8 GO:0005886 ... Q02762 27758861
    87 5kli:O (2.996) BS03 SMA ? GO:0005886 ... Q02761 27758861
    88 5yjw:A (1.85) BS05 SMA 1.6.5.9 GO:0003954 ... P32340 29402945 MOAD: ic50=107nM
    89 5yjw:A (1.85) BS06 SMA 1.6.5.9 GO:0003954 ... P32340 29402945 MOAD: ic50=107nM
    90 6nin:A (3.6) BS03 SMA ? GO:0005886 ... Q3IY10 31182483
    91 6nin:E (3.6) BS03 SMA ? GO:0005886 ... Q3IY10 31182483
    92 6nin:K (3.6) BS03 SMA ? GO:0005886 ... Q3IY10 31182483
    93 6nin:O (3.6) BS03 SMA ? GO:0005886 ... Q3IY10 31182483
    94 6nin:S (3.6) BS03 SMA ? GO:0005886 ... Q3IY10 31182483
    95 6nin:U (3.6) BS02 SMA 7.1.1.8 GO:0005886 ... Q3IY09 31182483
    96 6nin:W (3.6) BS03 SMA ? GO:0005886 ... Q3IY10 31182483
    97 7qhm:B (2.8) BS02 SMA 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    98 7qhm:N (2.8) BS07 SMA ? GO:0005886 ... Q79VE8 35087070
    99 7qhm:O (2.8) BS03 SMA 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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