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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5c4l:B (2.35) BS01 SIS ? GO:0000166 ... O68183 26802312 MOAD: Kd=2.3uM
    PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    2 5u08:A (1.52) BS01 SIS ? GO:0008080 ... A0A059WZ16 28756664
    3 5u08:A (1.52) BS02 SIS ? GO:0008080 ... A0A059WZ16 28756664
    4 5u08:B (1.52) BS01 SIS ? GO:0008080 ... A0A059WZ16 28756664
    5 5u08:B (1.52) BS02 SIS ? GO:0008080 ... A0A059WZ16 28756664
    6 5u08:C (1.52) BS01 SIS ? GO:0008080 ... A0A059WZ16 28756664
    7 5u08:C (1.52) BS04 SIS ? GO:0008080 ... A0A059WZ16 28756664
    8 5u08:D (1.52) BS01 SIS ? GO:0008080 ... A0A059WZ16 28756664
    9 5u08:D (1.52) BS02 SIS ? GO:0008080 ... A0A059WZ16 28756664
    10 6bbz:A (1.9) BS01 SIS 2.3.1.81 GO:0016746 ... Q47030 29632894
    11 6bc3:A (2.047) BS02 SIS 2.3.1.81 GO:0008080 ... Q47030 29632894
    12 6bc7:A (1.8) BS01 SIS 2.3.1.81 GO:0008080 ... Q47030 29632894
    13 6mb4:B (2.302) BS01 SIS 2.3.1.81 GO:0008080 ... Q51405 30347146
    14 6mn2:A (2.744) BS02 SIS 2.3.1.81 GO:0008080 ... A0A059X981 N/A
    15 6mn2:B (2.744) BS03 SIS 2.3.1.81 GO:0008080 ... A0A059X981 N/A
    16 6np2:A (1.2) BS01 SIS 2.3.1.81 GO:0008080 ... Q47030 31515870 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    17 7csi:A (1.89) BS01 SIS 2.3.1.- GO:0016746 ... P94968 33299080
    18 7csi:B (1.89) BS01 SIS 2.3.1.- GO:0016746 ... P94968 33299080
    19 7mqk:A (1.6) BS01 SIS 2.3.1.81 GO:0008080 ... P29808 35921328
    20 7mqk:B (1.6) BS01 SIS 2.3.1.81 GO:0008080 ... P29808 35921328
    21 7mqk:C (1.6) BS01 SIS 2.3.1.81 GO:0008080 ... P29808 35921328
    22 7mqk:D (1.6) BS01 SIS 2.3.1.81 GO:0008080 ... P29808 35921328
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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