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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hg0:A (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    2 1hg0:B (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    3 1hg0:C (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    4 1hg0:D (1.9) BS01 SIN 3.5.1.1 GO:0004067 ... P06608 11341830
    5 2w8q:A (2.4) BS01 SIN 1.2.1.24 GO:0004777 ... P51649 19300440
    6 5vo3:A (1.954) BS01 SIN 3.5.1.18 GO:0005829 ... P44514 29272107
    7 6g3g:A (2.606) BS01 SIN 4.3.2.1 GO:0003824 ... Q11KV9 29741885
    8 6riv:A (1.33) BS02 SIN 2.5.1.18 GO:0004364 ... Q9ZS17 32088578
    9 6riv:B (1.33) BS02 SIN 2.5.1.18 GO:0004364 ... Q9ZS17 32088578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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