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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hw9:A (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    2 1hw9:A (2.33) BS04 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    3 1hw9:B (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    4 1hw9:B (2.33) BS05 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    5 1hw9:C (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    6 1hw9:C (2.33) BS03 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    7 1hw9:D (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148
    8 1hw9:D (2.33) BS03 SIM 1.1.1.34 GO:0004420 ... P04035 11349148
    9 3hlf:A (2.0) BS01 SIM 2.3.1.238 GO:0016218 ... Q9Y7D1 19875080
    10 4xw2:A (2.001) BS02 SIM ? N/A P11215 27339893
    11 6kjf:A (2.4) BS01 SIM 3.1.1.- GO:0016787 ... B6H6L7 N/A
    12 6kjf:B (2.4) BS01 SIM 3.1.1.- GO:0016787 ... B6H6L7 N/A PDBbind: -logKd/Ki=4.97, Kd=10.8uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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