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BioLiP
Download all results in tab-seperated text for 1404 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ct1:G (2.3) BS01 SIA ? GO:0005515 ... P01556 9232653
    2 1ct1:H (2.3) BS01 SIA ? GO:0005515 ... P01556 9232653
    3 1dbn:A (2.75) BS03 SIA ? GO:0030246 ... P93248 10747930
    4 1dbn:B (2.75) BS03 SIA ? GO:0030246 ... P93248 10747930
    5 1f31:A (2.6) BS02 SIA 3.4.24.69 GO:0004222 ... P10844 10932256
    6 1g1r:B (3.4) BS02 SIA ? N/A P16109 11081633
    7 1g1r:D (3.4) BS02 SIA ? N/A P16109 11081633
    8 1g1s:A (1.9) BS03 SIA ? N/A P16109 11081633
    9 1g1s:B (1.9) BS03 SIA ? N/A P16109 11081633
    10 1g1t:A (1.5) BS02 SIA ? N/A P16581 11081633
    11 1h7t:B (2.48) BS02 SIA 2.7.7.38 GO:0005737 ... P42216 11545592
    12 1hgg:A (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    13 1hgg:A (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    14 1hgg:B (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    15 1hgg:C (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    16 1hgg:C (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    17 1hgg:D (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18 1hgg:E (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    19 1hgg:E (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    20 1hgg:F (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    21 1jsh:A (2.4) BS02 SIA ? GO:0019031 ... Q91CD4 11562490
    22 1jsi:A (2.4) BS03 SIA ? GO:0019031 ... Q91CD4 11562490
    23 1jsn:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    24 1jso:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    25 1kj2:A (2.71) BS01 SIA N/A N/A N/A 11911820
    26 1mco:H (3.2) BS03 SIA N/A N/A N/A 8483943
    27 1mqm:A (2.6) BS01 SIA ? GO:0019031 ... P03442 12758169
    28 1mqm:D (2.6) BS01 SIA ? GO:0019031 ... P03442 12758169
    29 1mqm:G (2.6) BS01 SIA ? GO:0019031 ... P03442 12758169
    30 1mqn:A (3.2) BS01 SIA ? GO:0019031 ... P03442 12758169
    31 1mqn:D (3.2) BS01 SIA ? GO:0019031 ... P03442 12758169
    32 1mwe:A (1.7) BS01 SIA 3.2.1.18 GO:0004308 ... P03472 9342319
    33 1mwe:A (1.7) BS02 SIA 3.2.1.18 GO:0004308 ... P03472 9342319
    34 1mx1:A (2.4) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12725862
    35 1mx1:B (2.4) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12725862
    36 1mx1:B (2.4) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12725862
    37 1mx1:D (2.4) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12725862
    38 1mx1:E (2.4) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12725862
    39 1mx5:A (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12679808
    40 1mx5:B (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12679808
    41 1mx5:B (2.8) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12679808
    42 1mx5:C (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12679808
    43 1mx5:F (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 12679808
    44 1n1y:A (2.8) BS01 SIA 3.2.1.18 GO:0004308 ... O44049 12507479
    45 1nsc:A (1.7) BS01 SIA 3.2.1.18 GO:0004308 ... P27907 8069621
    46 1nsc:B (1.7) BS01 SIA 3.2.1.18 GO:0004308 ... P27907 8069621
    47 1pto:B (3.5) BS01 SIA ? GO:0005576 ... P04978 7634099
    48 1pto:C (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    49 1pto:I (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    50 1qfo:A (1.85) BS01 SIA ? N/A Q62230 9660955
    51 1qfo:B (1.85) BS01 SIA ? N/A Q62230 9660955
    52 1qfo:C (1.85) BS01 SIA ? N/A Q62230 9660955
    53 1rvt:H (2.5) BS02 SIA ? GO:0019031 ... Q82500 14764886
    54 1rvt:J (2.5) BS02 SIA ? GO:0019031 ... Q82500 14764886
    55 1rvt:L (2.5) BS02 SIA ? GO:0019031 ... Q82500 14764886
    56 1rvx:A (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    57 1rvx:C (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    58 1rvx:E (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    59 1rvx:G (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    60 1rvx:I (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    61 1rvx:K (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    62 1rvz:A (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    63 1rvz:C (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    64 1rvz:E (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    65 1rvz:G (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    66 1rvz:I (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    67 1rvz:K (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    68 1s0i:A (1.6) BS02 SIA 3.2.1.18 GO:0004308 ... Q26966 15130470
    69 1se3:A (2.3) BS01 SIA ? GO:0005515 ... P01552 7552730
    70 1sid:A (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    71 1sid:B (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    72 1sid:C (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    73 1sid:D (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    74 1sid:E (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    75 1sid:F (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    76 1sie:A (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    77 1sie:B (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    78 1sie:C (3.65) BS01 SIA ? GO:0005198 ... P49302 8805524
    79 1sie:D (3.65) BS01 SIA ? GO:0005198 ... P49302 8805524
    80 1sie:E (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    81 1sie:F (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    82 1url:A (2.4) BS01 SIA ? N/A Q62230 15488769
    83 1usr:A (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    84 1usr:B (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    85 1usr:B (2.0) BS03 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    86 1usx:A (2.7) BS01 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    87 1usx:B (2.7) BS01 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    88 1usx:B (2.7) BS02 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    89 1usx:C (2.7) BS01 SIA 3.2.1.18 GO:0004308 ... P32884 15016893
    90 1uxa:A (1.5) BS01 SIA ? GO:0007155 ... Q64823 15220447 PDBbind: -logKd/Ki=2.30, Kd=5mM
    91 1uxa:B (1.5) BS01 SIA ? GO:0007155 ... Q64823 15220447 PDBbind: -logKd/Ki=2.30, Kd=5mM
    92 1uxa:C (1.5) BS01 SIA ? GO:0007155 ... Q64823 15220447
    93 1uxb:A (1.75) BS01 SIA ? GO:0007155 ... Q64822 15220447 PDBbind: -logKd/Ki=2.15, Kd=7mM
    94 1uxb:B (1.75) BS01 SIA ? GO:0007155 ... Q64822 15220447 PDBbind: -logKd/Ki=2.15, Kd=7mM
    95 1uxb:C (1.75) BS01 SIA ? GO:0007155 ... Q64822 15220447
    96 1v0f:C (2.55) BS01 SIA 3.2.1.129 GO:0016996 ... Q04830 15608653
    97 1v0f:D (2.55) BS01 SIA 3.2.1.129 GO:0016996 ... Q04830 15608653
    98 1v0f:D (2.55) BS02 SIA 3.2.1.129 GO:0016996 ... Q04830 15608653
    99 1v0f:E (2.55) BS01 SIA 3.2.1.129 GO:0016996 ... Q04830 15608653
    100 1vps:A (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    101 1vps:A (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    102 1vps:B (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    103 1vps:B (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    104 1vps:C (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    105 1vps:C (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    106 1vps:D (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    107 1vps:D (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    108 1vps:E (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    109 1vps:E (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    110 1w0o:A (1.9) BS05 SIA 3.2.1.18 GO:0004308 ... P0C6E9 15226294 MOAD: Kd~30uM
    111 1w0p:A (1.6) BS04 SIA 3.2.1.18 GO:0004308 ... P0C6E9 15226294 MOAD: Kd~30uM
    112 1w1x:A (2.0) BS04 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    113 1w1x:A (2.0) BS05 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    114 1w1x:B (2.0) BS04 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    115 1w1x:B (2.0) BS05 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    116 1w1x:C (2.0) BS03 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    117 1w1x:C (2.0) BS04 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    118 1w1x:D (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    119 1w1x:D (2.0) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    120 1w20:A (2.08) BS01 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    121 1w20:A (2.08) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    122 1w20:B (2.08) BS01 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    123 1w20:B (2.08) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    124 1w20:C (2.08) BS03 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    125 1w20:C (2.08) BS04 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    126 1w20:D (2.08) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    127 1w20:D (2.08) BS03 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    128 1w21:A (2.08) BS01 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    129 1w21:A (2.08) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    130 1w21:B (2.08) BS01 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    131 1w21:B (2.08) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    132 1w21:C (2.08) BS03 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    133 1w21:C (2.08) BS04 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    134 1w21:D (2.08) BS02 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    135 1w21:D (2.08) BS03 SIA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    136 1wgc:A (2.2) BS01 SIA ? GO:0008061 ... P10968 2231724
    137 1wgc:B (2.2) BS01 SIA ? GO:0008061 ... P10968 2231724
    138 1ww4:A (2.3) BS03 SIA 3.1.21.- GO:0004518 ... Q6WY08 16051274
    139 1ww4:B (2.3) BS03 SIA 3.1.21.- GO:0004518 ... Q6WY08 16051274
    140 1ww4:C (2.3) BS03 SIA 3.1.21.- GO:0004518 ... Q6WY08 16051274
    141 1ww4:D (2.3) BS03 SIA 3.1.21.- GO:0004518 ... Q6WY08 16051274
    142 1ya4:A (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    143 1ya4:B (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    144 1ya4:C (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    145 1ya8:A (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    146 1ya8:A (3.0) BS03 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    147 1ya8:B (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    148 1ya8:C (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    149 1yah:A (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    150 1yah:A (3.0) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    151 1yah:B (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    152 1yaj:A (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    153 1yaj:A (3.2) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    154 1yaj:B (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    155 1yaj:D (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    156 1yaj:E (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    157 1yaj:E (3.2) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    158 1yaj:F (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    159 1yaj:G (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    160 1yaj:H (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    161 1yaj:I (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    162 1yaj:J (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    163 1yaj:J (3.2) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    164 1yaj:K (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    165 1yaj:K (3.2) BS02 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    166 1yaj:L (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098
    167 1yyn:A (2.3) BS01 SIA 3.4.24.68 GO:0005576 ... P04958 16104015
    168 1yyn:A (2.3) BS02 SIA 3.4.24.68 GO:0005576 ... P04958 16104015
    169 1z4x:A (2.5) BS01 SIA 3.2.1.18 GO:0004308 ... P04850 15893670
    170 2bat:A (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... P06820 1438172
    171 2bf6:A (0.97) BS01 SIA 3.2.1.18 GO:0004308 ... Q59310 18218621
    172 2c25:A (1.8) BS02 SIA ? GO:0046872 ... Q309D1 16497330
    173 2c25:A (1.8) BS03 SIA ? GO:0046872 ... Q309D1 16497330
    174 2c25:A (1.8) BS04 SIA ? GO:0046872 ... Q309D1 16497330
    175 2c25:B (1.8) BS02 SIA ? GO:0046872 ... Q309D1 16497330
    176 2c25:B (1.8) BS03 SIA ? GO:0046872 ... Q309D1 16497330
    177 2c4a:A (2.15) BS01 SIA 3.2.1.18 GO:0004308 ... P03472 N/A
    178 2c4a:A (2.15) BS02 SIA 3.2.1.18 GO:0004308 ... P03472 N/A
    179 2c4l:A (2.15) BS01 SIA 3.2.1.18 GO:0004308 ... P03472 N/A
    180 2c4l:A (2.15) BS02 SIA 3.2.1.18 GO:0004308 ... P03472 N/A
    181 2chb:D (2.0) BS02 SIA ? GO:0005515 ... P01556 9232653
    182 2chb:E (2.0) BS02 SIA ? GO:0005515 ... P01556 9232653
    183 2chb:F (2.0) BS02 SIA ? GO:0005515 ... P01556 9232653
    184 2chb:G (2.0) BS02 SIA ? GO:0005515 ... P01556 9232653
    185 2chb:H (2.0) BS02 SIA ? GO:0005515 ... P01556 9232653
    186 2cwg:A (2.0) BS01 SIA ? GO:0008061 ... P10968 8345526
    187 2cwg:B (2.0) BS03 SIA ? GO:0008061 ... P10968 8345526
    188 2cwg:B (2.0) BS04 SIA ? GO:0008061 ... P10968 8345526
    189 2df3:A (1.9) BS01 SIA ? N/A Q9Y286 16623661
    190 2dqy:A (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    191 2dqy:B (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    192 2dqy:C (3.0) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    193 2dqz:A (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    194 2dqz:B (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    195 2dqz:C (2.8) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    196 2dr0:A (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    197 2dr0:B (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    198 2dr0:C (3.2) BS01 SIA 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16962139
    199 2ds0:A (1.8) BS02 SIA ? N/A O96048 17234683
    200 2ds0:B (1.8) BS02 SIA ? N/A O96048 17234683
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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