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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e5j:A (1.85) BS01 SGC 3.2.1.4 GO:0000272 ... O85465 11828460 PDBbind: -logKd/Ki=4.00, Ki=100uM
    2 1e5j:A (1.85) BS02 SGC 3.2.1.4 GO:0000272 ... O85465 11828460 PDBbind: -logKd/Ki=4.00, Ki=100uM
    3 1fce:A (2.0) BS02 SGC 3.2.1.4 GO:0004553 ... P37698 9755156
    4 1g9j:A (1.9) BS01 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    5 1g9j:A (1.9) BS03 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    6 1g9j:A (1.9) BS05 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    7 1g9j:A (1.9) BS07 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    8 1gz1:A (1.9) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12454501
    9 1h5v:A (1.1) BS02 SGC 3.2.1.4 GO:0000272 ... O85465 11679762 PDBbind: -logKd/Ki=3.93, Ki=117uM
    10 1iex:A (2.2) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 11709165
    11 1kfg:A (1.9) BS02 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    12 1kfg:A (1.9) BS04 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13 1kfg:B (1.9) BS02 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14 1kfg:B (1.9) BS04 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    15 1oc7:A (1.11) BS01 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    16 1oc7:A (1.11) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    17 1ocj:A (1.3) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    18 1ovw:A (2.7) BS02 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    19 1ovw:A (2.7) BS03 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    20 1ovw:B (2.7) BS02 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    21 1ovw:B (2.7) BS03 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    22 1ovw:C (2.7) BS02 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    23 1ovw:C (2.7) BS03 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    24 1ovw:D (2.7) BS02 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    25 1ovw:D (2.7) BS03 SGC 3.2.1.4 GO:0004553 ... P46237 8952478
    26 1p6w:A (2.0) BS02 SGC 3.2.1.1 GO:0004556 ... P00693 12906828
    27 1p6w:A (2.0) BS03 SGC 3.2.1.1 GO:0004556 ... P00693 12906828
    28 1p6w:A (2.0) BS04 SGC 3.2.1.1 GO:0004556 ... P00693 12906828
    29 1q2e:A (1.75) BS01 SGC 3.2.1.91 GO:0004553 ... P62694 14568538
    30 1q2e:B (1.75) BS01 SGC 3.2.1.91 GO:0004553 ... P62694 14568538
    31 1qjw:A (1.9) BS02 SGC 3.2.1.91 GO:0004553 ... P07987 10508787
    32 1qjw:B (1.9) BS02 SGC 3.2.1.91 GO:0004553 ... P07987 10508787
    33 1qk2:A (2.0) BS02 SGC 3.2.1.91 GO:0004553 ... P07987 10508787
    34 1qk2:B (2.0) BS02 SGC 3.2.1.91 GO:0004553 ... P07987 10508787
    35 1qm5:A (2.0) BS04 SGC 2.4.1.1 GO:0004645 ... P00490 10469642 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    36 1qm5:B (2.0) BS04 SGC 2.4.1.1 GO:0004645 ... P00490 10469642
    37 2bod:X (1.5) BS02 SGC 3.2.1.4 GO:0004553 ... P26222 16185060
    38 2bog:X (1.04) BS02 SGC 3.2.1.4 GO:0004553 ... P26222 16185060
    39 2qno:A (2.0) BS01 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    40 2qno:A (2.0) BS03 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    41 2qno:A (2.0) BS05 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    42 2qno:A (2.0) BS06 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    43 2qno:A (2.0) BS08 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    44 2vi0:A (1.51) BS04 SGC 3.2.1.4 GO:0004553 ... P16218 18292875
    45 4fg4:B (2.701) BS01 SGC ? GO:0005576 ... O34918 22927418
    46 4iih:A (2.0) BS08 SGC 3.2.1.21 GO:0004553 ... P48825 23537284
    47 4iih:B (2.0) BS08 SGC 3.2.1.21 GO:0004553 ... P48825 23537284
    48 4ipm:A (1.14) BS01 SGC 3.2.1.91 GO:0004553 ... D4HRL0 23733951
    49 4ipn:B (2.411) BS01 SGC 3.2.1.86 GO:0004553 ... A0A0H2UP35 23580646
    50 4ptv:A (1.85) BS01 SGC 3.2.1.21 GO:0004553 ... B8CYA8 25173693
    51 4ptv:B (1.85) BS01 SGC 3.2.1.21 GO:0004553 ... B8CYA8 25173693
    52 4zzt:A (1.56) BS01 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    53 4zzt:A (1.56) BS02 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    54 4zzt:A (1.56) BS04 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    55 4zzt:A (1.56) BS05 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    56 4zzu:A (1.44) BS01 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    57 4zzu:A (1.44) BS03 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    58 4zzu:A (1.44) BS04 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    59 4zzu:A (1.44) BS05 SGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... A0A088T0J9 26367132
    60 6jg1:A (1.78) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    61 6jgk:A (1.66) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    62 6jgo:A (1.95) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    63 6jgs:A (2.03) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    64 6lbb:A (1.8) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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