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BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 5why:B (2.692) BS02 SF4 ? GO:0003824 ... A3DDW1 28704043
    3002 5why:B (2.692) BS03 SF4 ? GO:0003824 ... A3DDW1 28704043
    3003 5wis:1d (2.703) BS02 SF4 ? GO:0003723 ... P80373 28934499
    3004 5wis:2d (2.703) BS02 SF4 ? GO:0003723 ... P80373 28934499
    3005 5wit:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 28934499
    3006 5wit:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 28934499
    3007 5wqq:A (0.8) BS01 SF4 ? GO:0009055 ... P80176 28542634
    3008 5wqr:A (0.8) BS01 SF4 ? GO:0009055 ... P80176 28542634
    3009 5xf9:A (2.58) BS02 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    3010 5xf9:B (2.58) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    3011 5xf9:B (2.58) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    3012 5xf9:C (2.58) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    3013 5xf9:D (2.58) BS01 SF4 ? GO:0008901 ... A0A077LAI5 28860386
    3014 5xf9:E (2.58) BS02 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    3015 5xf9:F (2.58) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    3016 5xf9:F (2.58) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    3017 5xf9:G (2.58) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    3018 5xf9:H (2.58) BS01 SF4 ? GO:0008901 ... A0A077LAI5 28860386
    3019 5xfa:A (2.7) BS01 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    3020 5xfa:B (2.7) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    3021 5xfa:B (2.7) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    3022 5xfa:C (2.7) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    3023 5xfa:E (2.7) BS01 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    3024 5xfa:F (2.7) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    3025 5xfa:F (2.7) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    3026 5xfa:G (2.7) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    3027 5xle:L (1.69) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    3028 5xle:S (1.69) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3029 5xle:S (1.69) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3030 5xlf:L (1.71) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    3031 5xlf:S (1.71) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3032 5xlf:S (1.71) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3033 5xlg:L (1.64) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    3034 5xlg:S (1.64) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3035 5xlg:S (1.64) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3036 5xlh:L (1.93) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    3037 5xlh:S (1.93) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3038 5xlh:S (1.93) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3039 5xmj:B (3.6) BS02 SF4 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    3040 5xmj:F (3.6) BS02 SF4 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    3041 5xmj:J (3.6) BS02 SF4 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    3042 5xmj:N (3.6) BS02 SF4 1.3.5.1 GO:0006099 ... T2G9X8 30297797
    3043 5xtb:A (3.4) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3044 5xtb:B (3.4) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3045 5xtb:B (3.4) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3046 5xtb:C (3.4) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    3047 5xtb:M (3.4) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3048 5xtb:M (3.4) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3049 5xtd:A (3.7) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3050 5xtd:B (3.7) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3051 5xtd:B (3.7) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3052 5xtd:C (3.7) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    3053 5xtd:M (3.7) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3054 5xtd:M (3.7) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3055 5xth:A (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3056 5xth:B (3.9) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3057 5xth:B (3.9) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3058 5xth:C (3.9) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    3059 5xth:M (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3060 5xth:M (3.9) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3061 5xti:A (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3062 5xti:B (17.4) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3063 5xti:B (17.4) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3064 5xti:BA (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3065 5xti:BB (17.4) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3066 5xti:BB (17.4) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    3067 5xti:BC (17.4) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    3068 5xti:BM (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3069 5xti:BM (17.4) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3070 5xti:C (17.4) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    3071 5xti:M (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3072 5xti:M (17.4) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    3073 5xvb:S (1.84) BS01 SF4 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    3074 5xvb:S (1.84) BS03 SF4 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    3075 5xvb:T (1.84) BS01 SF4 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    3076 5xvb:T (1.84) BS03 SF4 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    3077 5xvc:S (2.05) BS01 SF4 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    3078 5xvc:T (2.05) BS01 SF4 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    3079 5xvd:S (1.57) BS01 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    3080 5xvd:S (1.57) BS03 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    3081 5xvd:T (1.57) BS01 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    3082 5xvd:T (1.57) BS03 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    3083 5y34:B (1.32) BS03 SF4 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    3084 5y34:D (1.32) BS03 SF4 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    3085 5y4n:L (1.69) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    3086 5y4n:S (1.69) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3087 5y4n:S (1.69) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    3088 5y6q:B (2.5) BS02 SF4 ? GO:0000166 ... Q84IX9 29319807
    3089 5zf0:A1 (4.2) BS42 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    3090 5zf0:A2 (4.2) BS47 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    3091 5zf0:A3 (4.2) BS46 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    3092 5zf0:A4 (4.2) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    3093 5zf0:A5 (4.2) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    3094 5zf0:A6 (4.2) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    3095 5zf0:B1 (4.2) BS03 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    3096 5zf0:B2 (4.2) BS06 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    3097 5zf0:B3 (4.2) BS05 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    3098 5zf0:B4 (4.2) BS04 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    3099 5zf0:B5 (4.2) BS06 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    3100 5zf0:B6 (4.2) BS04 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    3101 5zf0:C1 (4.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3102 5zf0:C1 (4.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3103 5zf0:C2 (4.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3104 5zf0:C2 (4.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3105 5zf0:C3 (4.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3106 5zf0:C3 (4.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3107 5zf0:C4 (4.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3108 5zf0:C4 (4.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3109 5zf0:C5 (4.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3110 5zf0:C5 (4.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3111 5zf0:C6 (4.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3112 5zf0:C6 (4.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 29610537
    3113 5zgb:A (3.63) BS41 SF4 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    3114 5zgb:B (3.63) BS04 SF4 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    3115 5zgb:C (3.63) BS01 SF4 1.97.1.12 GO:0009055 ... Q85G47 29632169
    3116 5zgb:C (3.63) BS02 SF4 1.97.1.12 GO:0009055 ... Q85G47 29632169
    3117 5zgh:A (3.82) BS41 SF4 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    3118 5zgh:B (3.82) BS04 SF4 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    3119 5zgh:C (3.82) BS01 SF4 1.97.1.12 GO:0009055 ... Q85G47 29632169
    3120 5zgh:C (3.82) BS02 SF4 1.97.1.12 GO:0009055 ... Q85G47 29632169
    3121 5zji:A (3.3) BS46 SF4 1.97.1.12 GO:0000287 ... P04966 29880686
    3122 5zji:B (3.3) BS07 SF4 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    3123 5zji:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... A0A172FJJ4 29880686
    3124 5zji:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... A0A172FJJ4 29880686
    3125 5ztb:A (2.2) BS01 SF4 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    3126 5ztb:B (2.2) BS01 SF4 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    3127 5ztb:C (2.2) BS01 SF4 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    3128 6acn:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 2726740
    3129 6ail:A (1.335) BS01 SF4 ? GO:0004844 ... A0QP43 31101917
    3130 6aiq:A (0.85) BS01 SF4 ? GO:0009055 ... P80176 31365157
    3131 6air:A (0.85) BS01 SF4 ? GO:0009055 ... P80176 31365157
    3132 6ajo:A (2.269) BS02 SF4 ? GO:0004844 ... A0QP43 31101917
    3133 6ajp:A (1.334) BS02 SF4 ? GO:0004844 ... A0QP43 31101917
    3134 6ajq:A (1.342) BS01 SF4 ? GO:0004844 ... A0QP43 31101917
    3135 6ajr:A (1.341) BS01 SF4 ? GO:0004844 ... A0QP43 31101917
    3136 6ajs:A (1.632) BS01 SF4 ? GO:0004844 ... A0QP43 31101917
    3137 6awf:B (3.35) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 29158068
    3138 6awf:F (3.35) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 29158068
    3139 6b6v:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3140 6b6v:B (2.5) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3141 6b6w:A (1.72) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3142 6b6w:B (1.72) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3143 6b6x:A (1.84) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3144 6b6x:B (1.84) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3145 6b6y:A (2.6) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3146 6b6y:B (2.6) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3147 6btm:B (3.4) BS02 SF4 ? N/A A5FJF2 29695868
    3148 6buw:QD (3.5) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3149 6buw:XD (3.5) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3150 6bxk:A (2.347) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    3151 6bxk:B (2.347) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    3152 6bxl:A (2.301) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    3153 6bxl:B (2.301) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    3154 6bxm:A (2.252) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    3155 6bxm:B (2.252) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    3156 6bxn:A (2.079) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    3157 6bxn:B (2.079) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    3158 6bxo:A (1.655) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    3159 6bxo:B (1.655) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    3160 6bz6:QD (3.18) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3161 6bz6:XD (3.18) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3162 6bz7:QD (3.68) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3163 6bz7:XD (3.68) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3164 6bz8:QD (3.74) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3165 6bz8:XD (3.74) BS02 SF4 ? GO:0003723 ... P80373 30476222
    3166 6c3m:A (1.5) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    3167 6c3x:A (1.542) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    3168 6c3y:A (1.542) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    3169 6c3z:A (1.681) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    3170 6c8v:A (3.2) BS02 SF4 1.21.98.4 GO:0003824 ... P71517 29405700
    3171 6cae:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 29625040
    3172 6cae:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 29625040
    3173 6cfj:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 29410130
    3174 6cfj:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 29410130
    3175 6cfk:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 29410130
    3176 6cfk:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 29410130
    3177 6cfl:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 29410130
    3178 6cfl:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 29410130
    3179 6cfw:J (3.7) BS01 SF4 1.12.7.2 GO:0005886 ... Q8U0Z8 29754813
    3180 6cfw:N (3.7) BS01 SF4 ? GO:0003954 ... I6U851 29754813
    3181 6cfw:N (3.7) BS02 SF4 ? GO:0003954 ... I6U851 29754813
    3182 6cin:A (2.6) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3183 6cin:A (2.6) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3184 6cin:A (2.6) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3185 6cin:B (2.6) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3186 6cin:B (2.6) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3187 6cin:B (2.6) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3188 6cin:C (2.6) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3189 6cin:C (2.6) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3190 6cin:C (2.6) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3191 6cin:D (2.6) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3192 6cin:D (2.6) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3193 6cin:D (2.6) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3194 6cin:E (2.6) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3195 6cin:E (2.6) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3196 6cin:E (2.6) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3197 6cin:F (2.6) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3198 6cin:F (2.6) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3199 6cin:F (2.6) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3200 6cio:A (3.003) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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