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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 5aa5:B (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2202 5aa5:D (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2203 5aa5:D (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2204 5aa5:D (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2205 5aa5:F (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2206 5aa5:F (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2207 5aa5:F (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2208 5aa5:G (2.497) BS01 SF4 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    2209 5aa5:H (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2210 5aa5:H (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2211 5aa5:H (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2212 5aa5:I (2.497) BS02 SF4 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    2213 5aa5:K (2.497) BS01 SF4 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    2214 5aa5:M (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2215 5aa5:M (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2216 5aa5:M (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2217 5adu:S (1.1) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    2218 5adu:T (1.1) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    2219 5aop:A (2.2) BS01 SF4 1.8.1.2 GO:0004783 ... P17846 9315848
    2220 5b46:B (2.1) BS01 SF4 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    2221 5b47:B (2.2) BS01 SF4 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    2222 5b48:B (2.5) BS01 SF4 1.2.7.11 GO:0000287 ... Q96Y68 27619895
    2223 5b4e:A (2.698) BS04 SF4 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    2224 5b4f:A (2.75) BS03 SF4 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    2225 5bwe:B (3.3) BS01 SF4 ? GO:0046872 ... O68396 26224635
    2226 5bwe:F (3.3) BS01 SF4 ? GO:0046872 ... O68396 26224635
    2227 5byq:A (1.73) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2228 5byq:A (1.73) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2229 5byq:A (1.73) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2230 5byq:A (1.73) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2231 5byq:B (1.73) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2232 5byq:B (1.73) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2233 5byq:B (1.73) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2234 5byq:B (1.73) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2235 5byr:A (1.82) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2236 5byr:A (1.82) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2237 5byr:A (1.82) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2238 5byr:A (1.82) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2239 5byr:B (1.82) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2240 5byr:B (1.82) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2241 5byr:B (1.82) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2242 5byr:B (1.82) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2243 5bys:A (1.93) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2244 5bys:A (1.93) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2245 5bys:A (1.93) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2246 5bys:A (1.93) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2247 5bys:B (1.93) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2248 5bys:B (1.93) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2249 5bys:B (1.93) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2250 5bys:B (1.93) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2251 5c2t:B (2.75) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2252 5c2t:F (2.75) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2253 5c3j:B (2.8) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    2254 5c3j:F (2.8) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    2255 5c4i:B (2.274) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26061898
    2256 5c4i:B (2.274) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26061898
    2257 5c4i:C (2.274) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26061898
    2258 5c4i:E (2.274) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26061898
    2259 5c4i:E (2.274) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26061898
    2260 5c4i:F (2.274) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26061898
    2261 5ch7:A (2.2) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2262 5ch7:B (2.2) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2263 5ch7:B (2.2) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2264 5ch7:B (2.2) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2265 5ch7:C (2.2) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2266 5ch7:D (2.2) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2267 5ch7:D (2.2) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2268 5ch7:D (2.2) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2269 5ch7:E (2.2) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2270 5ch7:F (2.2) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2271 5ch7:F (2.2) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2272 5ch7:F (2.2) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2273 5chc:A (2.38) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2274 5chc:B (2.38) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2275 5chc:B (2.38) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2276 5chc:B (2.38) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2277 5chc:C (2.38) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2278 5chc:D (2.38) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2279 5chc:D (2.38) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2280 5chc:D (2.38) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2281 5chc:E (2.38) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2282 5chc:F (2.38) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2283 5chc:F (2.38) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2284 5chc:F (2.38) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2285 5czp:QD (3.29996) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2286 5czp:XD (3.29996) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2287 5d08:A (1.747) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2288 5d08:A (1.747) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2289 5d08:B (1.747) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2290 5d08:B (1.747) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2291 5d0a:A (2.1) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2292 5d0a:A (2.1) BS04 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2293 5d0a:B (2.1) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2294 5d0a:B (2.1) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2295 5d0a:C (2.1) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2296 5d0a:C (2.1) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2297 5d0a:D (2.1) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2298 5d0a:D (2.1) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2299 5d0b:A (2.645) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2300 5d0b:A (2.645) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2301 5d0b:B (2.645) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2302 5d0b:B (2.645) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2303 5d51:S (1.47) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 26913499
    2304 5d6s:A (2.65) BS01 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2305 5d6s:A (2.65) BS02 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2306 5d6s:B (2.65) BS01 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2307 5d6s:B (2.65) BS02 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2308 5d6s:C (2.65) BS01 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2309 5d6s:C (2.65) BS02 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2310 5d6s:D (2.65) BS01 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2311 5d6s:D (2.65) BS02 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2312 5d6s:E (2.65) BS01 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2313 5d6s:E (2.65) BS02 SF4 ? GO:0005737 ... A0A0R4I997 26378237
    2314 5d8v:A (0.48) BS01 SF4 ? GO:0009055 ... P80176 27279229
    2315 5dfe:QD (3.09998) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2316 5dfe:XD (3.09998) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2317 5dii:A (1.804) BS01 SF4 ? GO:0031469 ... D0LHE3 26704697
    2318 5dii:B (1.804) BS01 SF4 ? GO:0031469 ... D0LHE3 26704697
    2319 5dii:C (1.804) BS01 SF4 ? GO:0031469 ... D0LHE3 26704697
    2320 5dii:D (1.804) BS01 SF4 ? GO:0031469 ... D0LHE3 26704697
    2321 5dii:E (1.804) BS01 SF4 ? GO:0031469 ... D0LHE3 26704697
    2322 5dii:F (1.804) BS01 SF4 ? GO:0031469 ... D0LHE3 26704697
    2323 5dox:1d (3.1) BS02 SF4 ? GO:0003723 ... P80373 26028538
    2324 5dox:2d (3.1) BS02 SF4 ? GO:0003723 ... P80373 26028538
    2325 5doy:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 26028538
    2326 5doy:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 26028538
    2327 5dqo:A (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    2328 5dqo:B (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    2329 5dqo:C (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    2330 5dqo:D (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    2331 5dqr:A (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2332 5dqr:A (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2333 5dqr:B (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2334 5dqr:B (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2335 5dqr:C (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2336 5dqr:C (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2337 5dqr:D (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2338 5dqr:D (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2339 5dqr:E (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2340 5dqr:E (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2341 5dqr:F (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2342 5dqr:F (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    2343 5e44:A (2.65) BS01 SF4 ? GO:0003677 ... Q70ET4 26665177
    2344 5e7k:32 (3.2) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2345 5e7k:3E (3.2) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2346 5e7o:A (2.4) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2347 5e7o:B (2.4) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2348 5e7o:B (2.4) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2349 5e7o:B (2.4) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2350 5e7o:C (2.4) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2351 5e7o:D (2.4) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2352 5e7o:D (2.4) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2353 5e7o:D (2.4) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2354 5e7o:E (2.4) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2355 5e7o:F (2.4) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2356 5e7o:F (2.4) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2357 5e7o:F (2.4) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2358 5e7o:G (2.4) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2359 5e7o:H (2.4) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2360 5e7o:H (2.4) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2361 5e7o:H (2.4) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2362 5e7o:I (2.4) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2363 5e7o:J (2.4) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2364 5e7o:J (2.4) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2365 5e7o:J (2.4) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2366 5e7o:K (2.4) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2367 5e7o:L (2.4) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2368 5e7o:L (2.4) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2369 5e7o:L (2.4) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2370 5e81:32 (2.95) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2371 5e81:3E (2.95) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2372 5ean:A (2.36) BS02 SF4 3.1.-.-
    3.6.4.12    		 GO:0000076 ... Q6ZQJ5 26491943
    2373 5eaw:A (3.0) BS01 SF4 3.1.-.-
    3.6.4.12    		 GO:0000076 ... Q6ZQJ5 26491943
    2374 5eaw:B (3.0) BS01 SF4 3.1.-.-
    3.6.4.12    		 GO:0000076 ... Q6ZQJ5 26491943
    2375 5eax:A (3.05) BS02 SF4 3.1.-.-
    3.6.4.12    		 GO:0000076 ... Q6ZQJ5 26491943
    2376 5eax:B (3.05) BS02 SF4 3.1.-.-
    3.6.4.12    		 GO:0000076 ... Q6ZQJ5 26491943
    2377 5el4:32 (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2378 5el4:3E (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2379 5el5:32 (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2380 5el5:3E (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2381 5el6:32 (3.1) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2382 5el6:3E (3.1) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2383 5el7:32 (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2384 5el7:3E (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    2385 5exd:B (2.5) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2386 5exd:B (2.5) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2387 5exd:C (2.5) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    2388 5exd:E (2.5) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2389 5exd:E (2.5) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2390 5exd:F (2.5) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    2391 5exd:H (2.5) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2392 5exd:H (2.5) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2393 5exd:I (2.5) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    2394 5exd:K (2.5) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2395 5exd:K (2.5) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2396 5exd:L (2.5) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    2397 5exe:B (1.88) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2398 5exe:B (1.88) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2399 5exe:C (1.88) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    2400 5exe:E (1.88) BS01 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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