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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1oa0:A (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    2 1oa0:B (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    3 1oa1:A (1.55) BS02 SF3 1.7.99.1 GO:0003824 ... P31101 12764602
    4 1upx:A (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 14646063
    5 1upx:B (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 14646063
    6 3ayz:B (1.22) BS02 SF3 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    7 3ayz:D (1.22) BS02 SF3 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    8 3usc:S (2.0) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 22431599
    9 3usc:T (2.0) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 22431599
    10 3use:S (1.67) BS04 SF3 1.12.99.6 GO:0005515 ... P69739 22431599
    11 3use:T (1.67) BS04 SF3 1.12.99.6 GO:0005515 ... P69739 22431599
    12 4ue3:SSS (1.4) BS03 SF3 1.12.99.6 GO:0008901 ... P69739 26619250
    13 4ue3:TTT (1.4) BS03 SF3 1.12.99.6 GO:0008901 ... P69739 26619250
    14 5a4f:S (1.25) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    15 5a4f:T (1.25) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    16 5a4i:S (1.23) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    17 5a4i:T (1.23) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    18 5a4m:S (1.7) BS03 SF3 1.12.99.6 GO:0008901 ... P69739 26619250
    19 5a4m:T (1.7) BS03 SF3 1.12.99.6 GO:0008901 ... P69739 26619250
    20 5adu:S (1.1) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    21 5adu:T (1.1) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    22 5jrd:S (1.2) BS03 SF3 1.12.99.6 GO:0005886 ... P69740 28001048
    23 5jrd:T (1.2) BS03 SF3 1.12.99.6 GO:0005886 ... P69740 28001048
    24 5lmm:S (1.2) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 N/A
    25 5lmm:T (1.2) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 N/A
    26 5lry:S (1.4) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    27 5lry:T (1.4) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    28 5y34:B (1.32) BS01 SF3 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    29 5y34:D (1.32) BS01 SF3 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    30 6fpi:S (1.5) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    31 6fpi:T (1.5) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    32 6fpo:S (1.05) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    33 6fpo:T (1.05) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    34 6fpw:S (1.35) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    35 6fpw:T (1.35) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    36 6g7r:S (1.2) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    37 6g7r:T (1.2) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    38 6gal:S (1.25) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    39 6gal:T (1.25) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 30070475
    40 6rp2:S (1.35) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 32579353
    41 6rp2:T (1.35) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 32579353
    42 7b7t:A (1.38) BS03 SF3 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    43 7b7t:B (1.38) BS03 SF3 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    44 7b95:A (1.4) BS03 SF3 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    45 7b95:B (1.4) BS03 SF3 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    46 8cnr:A (1.45) BS03 SF3 N/A GO:0003824 ... N/A 37250035
    47 8cns:A (1.36) BS03 SF3 N/A GO:0003824 ... N/A 37250035
    48 8poz:S (1.65) BS04 SF3 N/A N/A P31892 37860641
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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