Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 266 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6mo3:B (1.79) BS02 SER 4.1.99.2 GO:0006520 ... P31013 N/A
    202 6nub:A (1.7) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812
    203 6nub:B (1.7) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812
    204 6py5:A (1.9) BS01 SER ? N/A Q3K7T6 31909676
    205 6rs6:A (1.6) BS02 SER N/A N/A N/A 31471321
    206 6smn:C (1.63) BS03 SER 2.1.2.1 GO:0004372 ... Q94C74 31873125
    207 6smn:D (1.63) BS03 SER 2.1.2.1 GO:0004372 ... Q94C74 31873125
    208 6smw:C (1.54) BS03 SER 2.1.2.1 GO:0004372 ... Q94C74 31873125
    209 6smw:D (1.54) BS02 SER 2.1.2.1 GO:0004372 ... Q94C74 31873125
    210 6uld:A (1.5) BS03 SER N/A GO:0004372 ... N/A N/A
    211 6uld:B (1.5) BS03 SER N/A GO:0004372 ... N/A N/A
    212 6vfd:A (1.7) BS01 SER 4.2.1.20 GO:0000162 ... P00929 N/A
    213 6vfd:B (1.7) BS02 SER 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    214 6xt1:A (2.49) BS03 SER ? N/A F8UNJ8 N/A
    215 6xt1:B (2.49) BS03 SER ? N/A F8UNJ8 N/A
    216 6z1s:A (1.53) BS01 SER ? GO:0004497 ... G2QLD3 33741634
    217 7a8y:BBB (1.75) BS05 SER 4.1.1.11 GO:0004068 ... A0A4Y8GT61 35980136
    218 7a8y:EaE (1.75) BS04 SER 4.1.1.11 GO:0004068 ... A0A4Y8GT61 35980136
    219 7b1l:A (1.85) BS03 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    220 7b1l:A (1.85) BS04 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    221 7b1l:B (1.85) BS04 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    222 7b1l:B (1.85) BS05 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    223 7f7r:A (1.63) BS01 SER ? GO:0003824 ... Q833V2 34826537
    224 7jqw:B (1.7) BS04 SER 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    225 7k5a:A (1.5) BS01 SER 4.2.1.20 GO:0000162 ... P00929 N/A
    226 7k69:A (1.6) BS03 SER 1.5.1.3 GO:0000166 ... A0PQG8 N/A
    227 7kq9:B (1.5) BS02 SER 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    228 7kvl:B (2.09) BS01 SER 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34174328
    229 7lz1:A (1.51) BS01 SER ? GO:0015276 ... Q8GXJ4 34161757
    230 7lz1:B (1.51) BS01 SER ? GO:0015276 ... Q8GXJ4 34161757
    231 7lz1:C (1.51) BS01 SER ? GO:0015276 ... Q8GXJ4 34161757
    232 7pow:B (2.51) BS04 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    233 7ra4:A (2.8) BS01 SER 2.3.1.30 GO:0005737 ... Q5F6X0 34890451
    234 7ra4:A (2.8) BS02 SER 2.3.1.30 GO:0005737 ... Q5F6X0 34890451
    235 7ra4:B (2.8) BS01 SER 2.3.1.30 GO:0005737 ... Q5F6X0 34890451
    236 7ra4:C (2.8) BS01 SER 2.3.1.30 GO:0005737 ... Q5F6X0 34890451
    237 7rs3:B (1.84) BS02 SER ? N/A P03372 34452998
    238 7x6f:B (2.3) BS01 SER ? N/A P0AD45 37877621
    239 7zvo:A (1.65) BS01 SER ? N/A Q8A921 36660365
    240 8b06:B (2.49) BS02 SER 4.2.1.20 GO:0000162 ... P0A2K1 37185266
    241 8fyv:A (2.2) BS01 SER ? GO:0006935 ... A0A5W2VA06 38820052
    242 8fyv:B (2.2) BS01 SER ? GO:0006935 ... A0A5W2VA06 38820052
    243 8fyv:C (2.2) BS01 SER ? GO:0006935 ... A0A5W2VA06 38820052
    244 8fyv:D (2.2) BS01 SER ? GO:0006935 ... A0A5W2VA06 38820052
    245 8fyv:E (2.2) BS01 SER ? GO:0006935 ... A0A5W2VA06 38820052
    246 8i04:A (2.3) BS01 SER 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    247 8i04:A (2.3) BS02 SER 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    248 8i04:B (2.3) BS01 SER 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    249 8i04:B (2.3) BS02 SER 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    250 8i04:C (2.3) BS01 SER 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    251 8i04:C (2.3) BS02 SER 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    252 8iz4:R (2.93) BS02 SER ? GO:0004930 ... Q9UPC5 N/A
    253 8izb:R (3.06) BS02 SER ? GO:0004930 ... Q9BXC1 38048360
    254 8of7:A (1.66) BS03 SER ? GO:0016853 ... A0A401MXE6 37305956
    255 8of7:B (1.66) BS01 SER ? GO:0016853 ... A0A401MXE6 37305956
    256 8sui:B (2.0) BS01 SER 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    257 8u99:A (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    258 8u99:B (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    259 8vl8:A (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    260 8vl8:B (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    261 8vl8:C (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    262 8vl8:D (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    263 8vl8:E (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    264 8wrb:R (2.91) BS01 SER ? GO:0004930 ... Q9UPC5 38048360
    265 9bow:A (1.8) BS01 SER N/A N/A Q5SI56 39148791
    266 9bow:B (1.8) BS01 SER N/A N/A Q5SI56 39148791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417