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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1l7p:A (1.9) BS01 SEP 3.1.3.3 GO:0000287 ... Q58989 12051918
    2 1l7p:B (1.9) BS01 SEP 3.1.3.3 GO:0000287 ... Q58989 12051918
    3 2du3:A (2.6) BS02 SEP 6.1.1.27 GO:0000049 ... O30126 17351629
    4 2du3:B (2.6) BS01 SEP 6.1.1.27 GO:0000049 ... O30126 17351629
    5 2du5:A (3.2) BS02 SEP 6.1.1.27 GO:0000049 ... O30126 17351629
    6 2du5:B (3.2) BS01 SEP 6.1.1.27 GO:0000049 ... O30126 17351629
    7 2du6:A (3.3) BS02 SEP 6.1.1.27 GO:0000049 ... O30126 17351629
    8 2du6:B (3.3) BS01 SEP 6.1.1.27 GO:0000049 ... O30126 17351629
    9 2jg8:C (2.05) BS01 SEP ? N/A P02747 18250442
    10 2jg8:D (2.05) BS01 SEP ? N/A P02745 18250442 MOAD: Kd=37nM
    PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    11 2yoa:A (1.5) BS04 SEP ? GO:0016020 ... P21707 23665582
    12 2yoa:B (1.5) BS04 SEP ? GO:0016020 ... P21707 23665582
    13 3aj4:A (1.0) BS01 SEP ? GO:0016020 ... Q96CS7 21911378
    14 3gp3:A (1.5) BS02 SEP 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    15 3gp3:B (1.5) BS02 SEP 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    16 3gp3:C (1.5) BS02 SEP 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    17 3gp3:D (1.5) BS02 SEP 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    18 3hl2:B (2.81) BS03 SEP 2.9.1.2 GO:0000049 ... Q9HD40 19608919
    19 3hl2:B (2.81) BS04 SEP 2.9.1.2 GO:0000049 ... Q9HD40 19608919
    20 3hl2:D (2.81) BS02 SEP 2.9.1.2 GO:0000049 ... Q9HD40 19608919
    21 3hl2:D (2.81) BS03 SEP 2.9.1.2 GO:0000049 ... Q9HD40 19608919
    22 3vsc:A (2.07) BS02 SEP 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 22580223
    23 3vsc:B (2.07) BS02 SEP 2.5.1.47
    2.5.1.65
    4.2.1.22    		 GO:0004122 ... Q9YBL2 22580223
    24 4a6f:A (1.68) BS02 SEP ? N/A P40485 22574179
    25 4a6f:B (1.68) BS01 SEP ? N/A P40485 22574179
    26 4a6f:B (1.68) BS02 SEP ? N/A P40485 22574179
    27 4azj:A (1.5) BS01 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    28 4azj:A (1.5) BS03 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    29 4azj:B (1.5) BS01 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    30 4azj:B (1.5) BS03 SEP 2.6.1.52 GO:0004648 ... Q9RME2 23633589
    31 4ij6:A (1.8) BS01 SEP 3.1.3.3 GO:0005737 ... D3DFG8 23479726
    32 4ij6:B (1.8) BS01 SEP 3.1.3.3 GO:0005737 ... D3DFG8 23479726
    33 4qys:A (1.939) BS02 SEP 4.2.1.20 GO:0000162 ... Q97TX6 25184516
    34 5a51:B (1.602) BS03 SEP ? GO:0005096 ... Q9LVH4 26719420
    35 5f7h:A (2.5) BS02 SEP ? N/A Q96H15 N/A
    36 5f7h:B (2.5) BS02 SEP ? N/A Q96H15 N/A
    37 5f7h:C (2.5) BS02 SEP ? N/A Q96H15 N/A
    38 5f7h:D (2.5) BS02 SEP ? N/A Q96H15 N/A
    39 5f7h:E (2.5) BS02 SEP ? N/A Q96H15 N/A
    40 5f7h:F (2.5) BS02 SEP ? N/A Q96H15 N/A
    41 5x0e:A (2.0) BS02 SEP 2.7.1.226 GO:0005524 ... Q5JD03 28358477
    42 5x0j:A (1.43) BS02 SEP 2.7.1.226 GO:0005524 ... Q5JD03 28358477
    43 5zr2:A (2.95) BS01 SEP ? GO:0005737 ... N9V397 30935984
    44 5zr2:B (2.95) BS01 SEP ? GO:0005737 ... N9V397 30935984
    45 5zr2:C (2.95) BS01 SEP ? GO:0005737 ... N9V397 30935984
    46 5zr2:D (2.95) BS01 SEP ? GO:0005737 ... N9V397 30935984
    47 6czz:A (1.7) BS02 SEP 2.6.1.52 GO:0004648 ... Q96255 30034403
    48 6czz:B (1.7) BS02 SEP 2.6.1.52 GO:0004648 ... Q96255 30034403
    49 6czz:B (1.7) BS04 SEP 2.6.1.52 GO:0004648 ... Q96255 30034403
    50 6czz:C (1.7) BS02 SEP 2.6.1.52 GO:0004648 ... Q96255 30034403
    51 6czz:C (1.7) BS04 SEP 2.6.1.52 GO:0004648 ... Q96255 30034403
    52 6czz:D (1.7) BS03 SEP 2.6.1.52 GO:0004648 ... Q96255 30034403
    53 6hyj:A (1.929) BS01 SEP 3.1.3.3 GO:0000287 ... P78330 31205021
    54 6hyj:B (1.929) BS01 SEP 3.1.3.3 GO:0000287 ... P78330 31205021
    55 6qu3:A (2.35) BS02 SEP 2.7.1.11 GO:0003872 ... O15648 33594070
    56 7e9h:R (4.0) BS01 SEP ? GO:0001640 ... Q14833 34135510
    57 7e9h:S (4.0) BS01 SEP ? GO:0001640 ... Q14833 34135510
    58 7mbh:B (2.1) BS01 SEP 4.2.1.11 GO:0000015 ... P09104 36893255
    59 7s0p:M (1.3) BS01 SEP ? N/A P12263 36387287
    60 8a5w:A (2.78) BS01 SEP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    61 8a5w:A (2.78) BS02 SEP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    62 8a5w:B (2.78) BS01 SEP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    63 8a5w:B (2.78) BS02 SEP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    64 8a5w:C (2.78) BS02 SEP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    65 8a5w:D (2.78) BS02 SEP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    66 8jd6:R (3.4) BS02 SEP ? GO:0001640 ... Q14833 37286794
    67 8jd6:S (3.4) BS02 SEP ? GO:0001640 ... Q14833 37286794
    68 8qbf:B (3.67) BS02 SEP N/A N/A P53252 39048819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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