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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bl7:A (2.5) BS01 SB4 2.7.11.24 GO:0000077 ... Q16539 9753691 PDBbind: -logKd/Ki=7.72, IC50=0.019uM
    BindingDB: IC50=19nM
    2 3erk:A (2.1) BS01 SB4 2.7.11.24 GO:0000165 ... P63086 9753691 MOAD: ic50=18uM
    PDBbind: -logKd/Ki=4.74, IC50=18uM
    BindingDB: IC50=18000nM
    3 4loo:A (1.95) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507 PDBbind: -logKd/Ki=8.15, Kd=7nM
    4 4lop:A (2.049) BS03 SB4 2.7.11.24 GO:0000077 ... P47811 24037507 PDBbind: -logKd/Ki=8.15, Kd=0.007uM
    5 4lop:B (2.049) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    6 4lop:C (2.049) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    7 4lop:D (2.049) BS03 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    8 4loq:A (2.319) BS03 SB4 2.7.11.24 GO:0000077 ... P47811 24037507 PDBbind: -logKd/Ki=8.15, Kd=0.007uM
    9 4loq:B (2.319) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    10 4loq:C (2.319) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    11 4loq:D (2.319) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    12 5o90:A (2.49) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 29229647
    13 6sov:A (1.31) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    14 6sp9:A (1.22) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    15 6spl:A (1.38) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    16 6y7w:A (1.39) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    17 6y7x:A (1.45) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    18 6y7y:A (1.51) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    19 6y7z:A (1.35) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    20 6y80:A (1.24) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    21 6y81:A (1.54) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    22 6y82:A (1.44) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    23 6y85:A (1.58) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    24 6y8h:A (1.37) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    25 6ycu:A (1.35) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    26 6ycw:A (1.34) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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