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BioLiP
Download all results in tab-seperated text for 1356 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cma:A (2.8) BS02 SAM ? GO:0003677 ... P0A8U6 1406951
    2 1cma:A (2.8) BS03 SAM ? GO:0003677 ... P0A8U6 1406951
    3 1cma:B (2.8) BS02 SAM ? GO:0003677 ... P0A8U6 1406951
    4 1cma:B (2.8) BS03 SAM ? GO:0003677 ... P0A8U6 1406951
    5 1cmc:A (1.8) BS02 SAM ? GO:0003677 ... P0A8U6 2677753
    6 1cmc:A (1.8) BS03 SAM ? GO:0003677 ... P0A8U6 2677753
    7 1cmc:B (1.8) BS01 SAM ? GO:0003677 ... P0A8U6 2677753
    8 1cmc:B (1.8) BS03 SAM ? GO:0003677 ... P0A8U6 2677753
    9 1eiz:A (1.7) BS01 SAM 2.1.1.166 GO:0001510 ... P0C0R7 10983982
    10 1ej0:A (1.5) BS01 SAM 2.1.1.166 GO:0001510 ... P0C0R7 10983982
    11 1fpq:A (2.0) BS01 SAM 2.1.1.154
    2.1.1.65    		 GO:0008168 ... P93324 11224575
    12 1g60:A (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    13 1g60:B (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    14 1h1d:A (2.0) BS02 SAM 2.1.1.6 GO:0000287 ... P22734 12237326
    15 1hmy:A (2.5) BS01 SAM 2.1.1.37 GO:0003677 ... P05102 8343957
    16 1i9g:A (1.98) BS01 SAM 2.1.1.220 GO:0005886 ... P9WFZ1 11554794
    17 1jg4:A (1.5) BS01 SAM 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    18 1kia:A (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    19 1kia:B (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    20 1kia:C (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    21 1kia:D (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    22 1mj2:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    23 1mj2:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    24 1mj2:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    25 1mj2:B (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26 1mj2:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    27 1mj2:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    28 1mj2:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    29 1mj2:D (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    30 1mjl:A (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    31 1mjl:A (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A
    32 1mjl:B (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    33 1mjl:B (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A
    34 1mjo:A (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    35 1mjo:A (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    36 1mjo:B (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    37 1mjo:B (2.1) BS05 SAM ? GO:0003677 ... P0A8U6 10986458
    38 1mjo:C (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    39 1mjo:C (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    40 1mjo:D (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    41 1mjo:D (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    42 1mjq:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    43 1mjq:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    44 1mjq:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    45 1mjq:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    46 1mjq:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    47 1mjq:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    48 1mjq:G (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    49 1mjq:G (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    50 1mjq:H (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    51 1mjq:H (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    52 1mjq:I (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    53 1mjq:I (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    54 1mjq:J (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    55 1mjq:J (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    56 1msk:A (1.8) BS01 SAM 2.1.1.13 GO:0008705 ... P13009 8939751
    57 1n2x:A (1.9) BS01 SAM 2.1.1.199 GO:0005737 ... Q9WZX6 12824489
    58 1n2x:B (1.9) BS01 SAM 2.1.1.199 GO:0005737 ... Q9WZX6 12824489
    59 1n6a:A (1.7) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    60 1n6c:A (2.3) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    61 1nbh:A (2.8) BS02 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    62 1nbh:B (2.8) BS02 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    63 1nbh:C (2.8) BS02 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    64 1nbh:D (2.8) BS02 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    65 1nbi:A (3.0) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    66 1nbi:B (3.0) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    67 1nbi:C (3.0) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    68 1nbi:D (3.0) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 12859184
    69 1nt2:A (2.9) BS01 SAM 2.1.1.- GO:0000494 ... O28192 12598892
    70 1nv8:A (2.2) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 12741815
    71 1nv8:B (2.2) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 12741815
    72 1nw3:A (2.5) BS01 SAM 2.1.1.360 GO:0031151 ... Q8TEK3 12628190
    73 1nw5:A (2.05) BS01 SAM 2.1.1.72 GO:0003676 ... P14751 12732637 MOAD: Kd=6.1uM
    PDBbind: -logKd/Ki=5.21, Kd=6.1uM
    74 1olt:A (2.07) BS02 SAM 1.3.98.3 GO:0003824 ... P32131 14633981
    75 1olt:A (2.07) BS03 SAM 1.3.98.3 GO:0003824 ... P32131 14633981
    76 1p7l:C (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    77 1p7l:C (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    78 1p7l:D (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    79 1p7l:D (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    80 1p91:A (2.8) BS02 SAM 2.1.1.187 GO:0006364 ... P36999 14999102
    81 1p91:B (2.8) BS02 SAM 2.1.1.187 GO:0006364 ... P36999 14999102
    82 1qao:A (2.7) BS01 SAM 2.1.1.184 GO:0000154 ... P13956 10366505
    83 1qzz:A (2.1) BS01 SAM 4.1.1.- GO:0008168 ... Q54527 14607118
    84 1r30:A (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    85 1r30:B (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    86 1rg9:A (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    87 1rg9:A (2.5) BS03 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    88 1rg9:B (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    89 1rg9:B (2.5) BS03 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    90 1rg9:C (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    91 1rg9:C (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    92 1rg9:D (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    93 1rg9:D (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    94 1ri4:A (2.4) BS01 SAM 2.1.1.56 GO:0003723 ... Q8SR66 14731396
    95 1rjd:A (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    96 1rjd:B (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    97 1rjd:C (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    98 1rqp:A (1.8) BS01 SAM 2.5.1.63 GO:0016740 ... Q70GK9 14765200
    99 1rqp:A (1.8) BS02 SAM 2.5.1.63 GO:0016740 ... Q70GK9 14765200
    100 1rqp:B (1.8) BS01 SAM 2.5.1.63 GO:0016740 ... Q70GK9 14765200
    101 1rqp:B (1.8) BS02 SAM 2.5.1.63 GO:0016740 ... Q70GK9 14765200
    102 1rqp:C (1.8) BS01 SAM 2.5.1.63 GO:0016740 ... Q70GK9 14765200
    103 1rqp:C (1.8) BS02 SAM 2.5.1.63 GO:0016740 ... Q70GK9 14765200
    104 1sg9:A (2.3) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 18247349
    105 1sg9:B (2.3) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 18247349
    106 1sg9:C (2.3) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 18247349
    107 1sqf:A (2.1) BS01 SAM 2.1.1.176 GO:0001510 ... P36929 14656444
    108 1tv8:A (2.2) BS01 SAM 4.1.99.22 GO:0003824 ... P65388 15317939
    109 1tv8:B (2.2) BS01 SAM 4.1.99.22 GO:0003824 ... P65388 15317939
    110 1uak:A (2.05) BS01 SAM 2.1.1.228 GO:0002939 ... P43912 12773376
    111 1v2x:A (1.5) BS03 SAM 2.1.1.34 GO:0000049 ... Q5SM16 15062082
    112 1ve3:A (2.1) BS01 SAM ? GO:0016740 ... O57965 29199993
    113 1ve3:B (2.1) BS01 SAM ? GO:0016740 ... O57965 29199993
    114 1vid:A (2.0) BS02 SAM 2.1.1.6 GO:0000287 ... P22734 8127373
    115 1vpt:A (1.8) BS01 SAM 2.1.1.57 GO:0003723 ... P07617 8612277
    116 1vq1:A (2.8) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 N/A
    117 1vq1:B (2.8) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 N/A
    118 1wg8:A (2.0) BS01 SAM 2.1.1.199 GO:0005737 ... Q5SJD8 N/A
    119 1wg8:B (2.0) BS01 SAM 2.1.1.199 GO:0005737 ... Q5SJD8 N/A
    120 1x1a:A (2.6) BS01 SAM 2.1.1.333 GO:0008168 ... Q8KGE0 16797589
    121 1x7p:A (2.55) BS01 SAM 2.1.1.208 GO:0003723 ... Q9F5K6 15581897
    122 1x7p:B (2.55) BS01 SAM 2.1.1.208 GO:0003723 ... Q9F5K6 15581897
    123 1xds:A (2.3) BS01 SAM 4.1.1.- GO:0008168 ... Q54527 15548527
    124 1xds:B (2.3) BS01 SAM 4.1.1.- GO:0008168 ... Q54527 15548527
    125 1xva:A (2.2) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 8810903
    126 1xva:B (2.2) BS02 SAM 2.1.1.20 GO:0005542 ... P13255 8810903
    127 1zq9:A (1.9) BS01 SAM 2.1.1.183 GO:0000154 ... Q9UNQ2 N/A
    128 1zq9:B (1.9) BS01 SAM 2.1.1.183 GO:0000154 ... Q9UNQ2 N/A
    129 2a5h:A (2.1) BS01 SAM 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    130 2a5h:B (2.1) BS02 SAM 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    131 2a5h:C (2.1) BS01 SAM 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    132 2a5h:D (2.1) BS03 SAM 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    133 2adm:A (2.6) BS01 SAM 2.1.1.72 GO:0003676 ... P14385 8995524
    134 2adm:B (2.6) BS01 SAM 2.1.1.72 GO:0003676 ... P14385 8995524 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    135 2avd:A (1.7) BS01 SAM 2.1.1.- GO:0008171 ... Q86VU5 N/A
    136 2avd:B (1.7) BS01 SAM 2.1.1.- GO:0008171 ... Q86VU5 N/A
    137 2b25:A (2.5) BS01 SAM 2.1.1.-
    2.1.1.220    		 GO:0030488 ... Q9BVS5 N/A
    138 2b25:B (2.5) BS01 SAM 2.1.1.-
    2.1.1.220    		 GO:0030488 ... Q9BVS5 N/A
    139 2b9e:A (1.65) BS01 SAM 2.1.1.- GO:0001510 ... Q96P11 N/A
    140 2bm9:A (2.94) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    141 2bm9:B (2.94) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    142 2bm9:C (2.94) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    143 2bm9:D (2.94) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    144 2bm9:E (2.94) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    145 2bm9:F (2.94) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    146 2br4:A (2.59) BS02 SAM ? GO:0008168 ... B5GLB3 16527306
    147 2br4:B (2.59) BS02 SAM ? GO:0008168 ... B5GLB3 16527306
    148 2br4:C (2.59) BS02 SAM ? GO:0008168 ... B5GLB3 16527306
    149 2br4:D (2.59) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    150 2br4:E (2.59) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    151 2br4:F (2.59) BS01 SAM ? GO:0008168 ... B5GLB3 16527306
    152 2c2b:A (2.6) BS01 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    153 2c2b:A (2.6) BS03 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    154 2c2b:A (2.6) BS04 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    155 2c2b:B (2.6) BS01 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    156 2c2b:B (2.6) BS02 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    157 2c2b:B (2.6) BS03 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    158 2c2b:C (2.6) BS01 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    159 2c2b:C (2.6) BS03 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    160 2c2b:C (2.6) BS04 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    161 2c2b:D (2.6) BS01 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    162 2c2b:D (2.6) BS02 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    163 2c2b:D (2.6) BS03 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    164 2c2b:E (2.6) BS01 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    165 2c2b:E (2.6) BS03 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    166 2c2b:E (2.6) BS04 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    167 2c2b:F (2.6) BS01 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    168 2c2b:F (2.6) BS02 SAM 4.2.3.1 GO:0004795 ... Q9S7B5 16319072
    169 2cdq:A (2.85) BS03 SAM 2.7.2.4 GO:0004072 ... Q9LYU8 16731588
    170 2cdq:B (2.85) BS04 SAM 2.7.2.4 GO:0004072 ... Q9LYU8 16731588
    171 2cl5:A (1.6) BS02 SAM 2.1.1.6 GO:0000287 ... P22734 16618795
    172 2cl5:B (1.6) BS03 SAM 2.1.1.6 GO:0000287 ... P22734 16618795
    173 2dpm:A (1.8) BS01 SAM 2.1.1.72 GO:0003676 ... P04043 9862809
    174 2egv:A (1.45) BS01 SAM 2.1.1.193 GO:0005737 ... O66552 N/A
    175 2egv:B (1.45) BS01 SAM 2.1.1.193 GO:0005737 ... O66552 N/A
    176 2ejt:A (2.2) BS01 SAM 2.1.1.216 GO:0000049 ... O59493 18789948
    177 2f8l:A (2.2) BS01 SAM 2.1.1.72 GO:0003677 ... Q8Y6U9 N/A
    178 2fb2:A (2.25) BS01 SAM 4.1.99.22 GO:0003824 ... P69848 16632608
    179 2fb2:B (2.25) BS01 SAM 4.1.99.22 GO:0003824 ... P69848 16632608
    180 2fk8:A (2.0) BS01 SAM 2.1.1.- GO:0005515 ... Q79FX8 16356931
    181 2g70:A (2.4) BS01 SAM 2.1.1.28 GO:0004603 ... P11086 17845018
    182 2g70:B (2.4) BS01 SAM 2.1.1.28 GO:0004603 ... P11086 17845018
    183 2g72:A (2.0) BS01 SAM 2.1.1.28 GO:0004603 ... P11086 17845018
    184 2g72:B (2.0) BS01 SAM 2.1.1.28 GO:0004603 ... P11086 17845018
    185 2glu:A (2.91) BS01 SAM 2.1.1.- GO:0008168 ... O31474 N/A
    186 2glu:B (2.91) BS01 SAM 2.1.1.- GO:0008168 ... O31474 N/A
    187 2h21:A (2.45) BS01 SAM 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 16682405 MOAD: Kd=0.29uM
    PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    188 2h21:B (2.45) BS01 SAM 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 16682405 MOAD: Kd=0.29uM
    189 2h21:C (2.45) BS01 SAM 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 16682405 MOAD: Kd=0.29uM
    190 2hma:A (2.41) BS02 SAM 2.8.1.13 GO:0000049 ... Q97T38 N/A
    191 2hmy:B (2.61) BS01 SAM 2.1.1.37 GO:0003677 ... P05102 10080885
    192 2igt:A (1.89) BS01 SAM ? GO:0008168 ... A9CKD6 N/A
    193 2igt:B (1.89) BS01 SAM ? GO:0008168 ... A9CKD6 N/A
    194 2igt:C (1.89) BS01 SAM ? GO:0008168 ... A9CKD6 N/A
    195 2npn:A (1.6) BS02 SAM ? GO:0008168 ... Q6NIF5 N/A
    196 2nv4:A (2.2) BS01 SAM ? N/A O29998 17588214
    197 2nv4:B (2.2) BS01 SAM ? N/A O29998 17588214
    198 2nxe:A (1.75) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 17215866 MOAD: Kd=5.5uM
    199 2nxe:B (1.75) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 17215866 MOAD: Kd=5.5uM
    200 2nyu:A (1.76) BS01 SAM 2.1.1.- GO:0001510 ... Q9UI43 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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