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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aqb:A (1.65) BS02 RTL ? GO:0005501 ... P27485 9757135
    2 1brp:A (2.5) BS01 RTL ? GO:0001654 ... P02753 8464067
    3 1crb:A (2.1) BS01 RTL ? GO:0002138 ... P02696 7683727
    4 1eii:A (-1.00) BS01 RTL ? GO:0005504 ... P06768 10884357
    5 1fbm:A (2.7) BS01 RTL ? N/A P35444 9736606 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    6 1fbm:B (2.7) BS01 RTL ? N/A P35444 9736606 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    7 1fbm:D (2.7) BS01 RTL ? N/A P35444 9736606 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    8 1fbm:E (2.7) BS01 RTL ? N/A P35444 9736606 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    9 1fmj:A (2.0) BS03 RTL ? GO:0005737 ... Q26490 11323722
    10 1fmj:B (2.0) BS03 RTL ? GO:0005737 ... Q26490 11323722
    11 1fml:A (2.75) BS03 RTL ? GO:0005737 ... Q26490 11323722
    12 1fml:B (2.75) BS03 RTL ? GO:0005737 ... Q26490 11323722
    13 1gx8:A (2.4) BS01 RTL ? GO:0005515 ... P02754 12054801 PDBbind: -logKd/Ki=6.37, Kd=0.43uM
    BindingDB: Kd=36nM
    14 1hbp:A (1.9) BS01 RTL ? GO:0005501 ... P18902 8496140
    15 1iiu:A (2.5) BS01 RTL ? GO:0001555 ... P41263 11738088
    16 1kgl:A (-1.00) BS01 RTL ? GO:0002138 ... P02696 11934897
    17 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    18 1kt3:A (1.4) BS01 RTL ? GO:0005501 ... P18902 12787682
    19 1kt4:A (1.461) BS01 RTL ? GO:0005501 ... P18902 12787682
    20 1kt5:A (1.46) BS01 RTL ? GO:0005501 ... P18902 12787682
    21 1kt6:A (1.1) BS01 RTL ? GO:0005501 ... P18902 12787682
    22 1kt7:A (1.274) BS01 RTL ? GO:0005501 ... P18902 12787682
    23 1mx8:A (-1.00) BS01 RTL ? GO:0002138 ... P02696 12850148
    24 1qab:E (3.2) BS01 RTL ? GO:0001654 ... P02753 10052934
    25 1qab:F (3.2) BS01 RTL ? GO:0001654 ... P02753 10052934
    26 1rbp:A (2.0) BS01 RTL ? GO:0001654 ... P02753 2217163 MOAD: Kd=0.19uM
    PDBbind: -logKd/Ki=6.72, Kd=0.19uM
    27 2rct:A (1.2) BS01 RTL ? GO:0005501 ... P50120 18076076
    28 3bsz:E (3.38) BS01 RTL ? GO:0001654 ... P02753 19021760
    29 3bsz:F (3.38) BS01 RTL ? GO:0001654 ... P02753 19021760
    30 4qyn:A (1.19) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    31 4qyn:B (1.19) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    32 4qzt:A (1.9) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    33 4qzt:C (1.9) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    34 4qzu:A (1.5) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    35 4qzu:B (1.5) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    36 4qzu:C (1.5) BS01 RTL ? GO:0005501 ... P50120 25478840 MOAD: Kd=2nM
    37 5h8t:A (1.21) BS01 RTL ? GO:0002138 ... P09455 26900151 MOAD: Kd=18.5nM
    38 5hbs:A (0.89) BS01 RTL ? GO:0002138 ... P09455 26900151 MOAD: Kd=18.5nM
    PDBbind: -logKd/Ki=7.73, Kd=18.5nM
    39 5ljb:A (1.263) BS01 RTL ? GO:0002138 ... P09455 28057518 MOAD: Kd=4.5nM
    40 5ljc:A (1.433) BS01 RTL ? GO:0002138 ... P09455 28057518 MOAD: Kd=65nM
    41 5ljd:A (1.61) BS01 RTL ? GO:0002138 ... P09455 28057518 MOAD: Kd=70nM
    42 5lje:A (1.4) BS01 RTL ? GO:0005501 ... P09455 28057518 MOAD: Kd=250nM
    43 5nu7:A (1.5) BS01 RTL ? GO:0001654 ... P02753 29414511
    44 6py0:A (2.204) BS01 RTL ? GO:0005576 ... P04918 31484771 PDBbind: -logKd/Ki=6.41, Kd=386nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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